G409117


Basic Information

Item Value
gene id G409117
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2305069 ~ 2306889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU470061
CAAATACAAAATAAGAATTGTTTATTGCATATTATAGATACATTTTAATACATACACTTGCATGCACTTGGAAAAAAGCTAGTAATGGGCTAAATAACAATGAATACATAGAAAAAATGTTATAATTCATAAGCAACATGAATAAACCATTTAAATACAATAGGCTATACAAGAAAAGACATCTCAACAAAAAGCATGGAAACACAAATATGTTCAATGTAATAAATCAATGTAAAAAAAAAAAAAAAAATGGCAATAATCTTGACAGCACTAATTTAAAAAAAAAACATCTGACGTCACTGTTTCCAGGTCCAAAAGCTCTATCAGATGCCAGAAGCAAACAATAAACTGTGCTAATATACACTCAGTGTGTTGTTATACTACTGAAGAATCATGAATCTTTATCTCCATATACCGAAATCTCAAGCCTACTTCGGACACCAGCAGATTTTGGTAACAAAATATGATGCTTCTATGCTTTTGTTTATAATACATAATACATATACAGAGAGAGTATATGTATTAGAAGTAATAATACCAGTTGGACCCAACATGTGTCAACACATTTAAAAAAGCTTTAATTGCCTTTAATTATTAAACTATGAACTACTGTATTAAATATAAGCCCGGTGACTTAAAAGGTAAAAAACACAAATATGTATCATTCATATTTTATAAATCATCAAACAGCCTTTAGGCCTAATTCAAATACCCAATTCATATCCATAATTGTGCAAACAAATTCACTCAATCCACACTGTGAAAGTTTTTACCAGTTGCTTGACCTAATCACATAGAAAAATATCAAGGAAGAAGGTTATAAGTTAAGAATGATATCTAGAGAAAAAAAAAAAGATTAGGATCATAAAACAGGAGTCTAAATTTATTTAGCACAAAAAAATAAAAAATAAAGTAAAAATAGATTCCATCATGCCTCAAAAATGTTTAAGTATGTAACCAAACTGCTTTTGTAGCCCTGGATGATGAAACATACAGTATTAAGGTTTTTTTAGCAAAACTTTGACAATGCATCCTCAACCTGCTTGTTTGCCAGCTTCATTTTGATATTGGACCAACTTTCTGGAATAAGTAGCAAAAAATAATAATAATAACTTACACTTACATTAAATTTAAATATAACTGAGATATGTTATTGACAGGTTTCATGGGATTCAACATAATTTCTCTTGTTTCTATTTGCATGAGGTATTGAGGAAATGCAAAAGCAATTAGCCATACTCATCACTCATCCAGAAGTGTCTCAGGTTTCTCGTATTCAAATAATCTAAAGTCTGTTTCATAAAGATTGTACAGTTTTCTCCTGTCAGCTATGGAAATGTTTGCAAACCAGTCTCGCTCCCAGTCTACTGATGTCCTATCCTTGTACCCGGGGGGAAAGTGAATATATTTTTCCAGCCCAAGAATCTTCAACAAATGTTCTGTATCCTCATCAAGAGTTTCCATCTTCCCAACAAAATCATAGTCAATTTGACATGGATGGCAGAGTCTGTAAATCTGCTGCCAGTGTTCATTGAATGGATTCTTCTTCTCAGTCTGTGGATCTAACAGGTACTGAATAAAGTGAGTAAAGGACAGTCTGATGCCTGCGGTGAAGGCCTCTTGAGCAGAGTCAGGGGTGTTTGAAATATTTGCATAACGCTGAAGCATTGTGGACCCAAAGTGTCTGTAGAAATCCTTATTTGGCCTAGCAAACTTGTCCCGGAAAGCAGAAATAAGTCGTACAAAAGGATCCCGTACAAAAAGAAACTTAGTGTAATTCTTTAGTTTTTGATGCATTAAAGGACTTGAGAAATTACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470061 True 1821 lncRNA 0.33 1 2305069 2306889

Neighbor

gene id symbol gene type direction distance location
CI01000300_01976057_01980856 NA coding upstream 323882 1976057 ~ 1981187 (+)
CI01000300_01801423_01807504 CNGA3 coding upstream 496944 1801423 ~ 1808125 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding upstream 521268 1771784 ~ 1783801 (+)
CI01000300_01753916_01754815 NA coding upstream 550089 1753916 ~ 1754980 (+)
CI01000300_01571005_01611574 DACHB coding upstream 693495 1569612 ~ 1611574 (+)
CI01000300_02313596_02320912 NA coding downstream 5626 2312515 ~ 2321088 (+)
CI01000300_02340225_02344792 NA coding downstream 31899 2338788 ~ 2344976 (+)
CI01000300_02356651_02369301 EIF3B coding downstream 49507 2356396 ~ 2370981 (+)
CI01000300_02372157_02389226 NA coding downstream 64878 2371767 ~ 2389411 (+)
CI01000300_02391089_02392297 CHST12B coding downstream 83629 2390518 ~ 2392344 (+)
G409028 NA non-coding upstream 340972 1963272 ~ 1964097 (+)
G409018 NA non-coding upstream 345479 1930231 ~ 1959590 (+)
G409006 NA non-coding upstream 426196 1878286 ~ 1878873 (+)
G408976 NA non-coding upstream 518345 1786494 ~ 1786724 (+)
G408929 NA non-coding upstream 560296 1735498 ~ 1744773 (+)
G409141 NA non-coding downstream 30674 2337563 ~ 2337787 (+)
G409155 NA non-coding downstream 99622 2406511 ~ 2406856 (+)
G409174 NA non-coding downstream 154201 2461090 ~ 2461979 (+)
G409205 NA non-coding downstream 157590 2464479 ~ 2465111 (+)
G408910 NA other upstream 670100 1633030 ~ 1634969 (+)
G408498 NA other upstream 1284335 1017067 ~ 1020734 (+)
G408510 NA other upstream 1327970 976600 ~ 977099 (+)
G409984 NA other downstream 964796 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1594299 3901148 ~ 3902892 (+)
G410382 NA other downstream 1816809 4123698 ~ 4124416 (+)
G410388 NA other downstream 1888757 4195646 ~ 4196555 (+)

Expression


Co-expression Network