G409174


Basic Information

Item Value
gene id G409174
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2461090 ~ 2461979 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU470143
TCCGAGTCCTCCGGGCGGAAATCGCTGCTGGTCAGCTGAAACTGTAGGTTGAAGTGTGGAAGGCGATGAAAAAGGTTAACCCACCACGGCGGAGAATAATTCACCACTGCAGCCATAGTGTTCATGCAGATCTGTGGCCGCTGTCAGCCTAAACCATAGTTCCAGCAAAAATCTGCGATGATCTCAACAACAGACAAATGGCTCCTGTCCTTCGACGTTTTGGTCGAAAAGCAGCAACAGCAGGTTTATCTGTGCTCAGCAGTCAGCATGCACCGAGTATCTTGTCCAACAACGCAGCCCCTGCGTCACTGCCGTCTGCATGTTATCCAGCGATACACTCACTGGAACTGAAGCGAGAGCTTTAAACGCCTTTGATGTCCATCGCGCTTTTGTTTTAAGGTAGTCCCGCAACGCTTTCTTCGAGTAGACGCGCGTGATCAGCGCTTGTGCATTTCTGTCGCGTTACAGTTGAGATACGCGATGATATCACACATTGCGAGGATGAACTAGTGATTTGTGTGAAAGACTACATACGGGCGTGATTGTCAATCATCCACGTCCATATATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470143 True 571 lncRNA 0.49 2 2461090 2461979

Neighbor

gene id symbol gene type direction distance location
CI01000300_02391089_02392297 CHST12B coding upstream 68746 2390518 ~ 2392344 (+)
CI01000300_02372157_02389226 NA coding upstream 71679 2371767 ~ 2389411 (+)
CI01000300_02356651_02369301 EIF3B coding upstream 90109 2356396 ~ 2370981 (+)
CI01000300_02340225_02344792 NA coding upstream 116114 2338788 ~ 2344976 (+)
CI01000300_02313596_02320912 NA coding upstream 140002 2312515 ~ 2321088 (+)
CI01000300_02477372_02477542 NA coding downstream 15332 2477311 ~ 2477549 (+)
CI01000300_02481007_02486342 SNX8B coding downstream 16895 2478874 ~ 2487067 (+)
CI01000300_02529181_02537776 TSPAN5.S, TSPAN5.L, TSPAN5A, TSPAN5B, TSPAN5, TSN5 coding downstream 67202 2529181 ~ 2537776 (+)
CI01000300_02553990_02570561 SLC24A2 coding downstream 91494 2553473 ~ 2570933 (+)
CI01000300_02573883_02577623 NA coding downstream 110612 2572591 ~ 2577623 (+)
G409155 NA non-coding upstream 54234 2406511 ~ 2406856 (+)
G409141 NA non-coding upstream 123303 2337563 ~ 2337787 (+)
G409117 NA non-coding upstream 154201 2305069 ~ 2306889 (+)
G409028 NA non-coding upstream 496993 1963272 ~ 1964097 (+)
G409205 NA non-coding downstream 2500 2464479 ~ 2465111 (+)
G409172 NA non-coding downstream 31470 2493449 ~ 2505501 (+)
G409246 NA non-coding downstream 123720 2585699 ~ 2585913 (+)
G409251 NA non-coding downstream 139762 2601741 ~ 2601964 (+)
G409163 NA non-coding downstream 159059 2621038 ~ 2630438 (+)
CI01000300_01753916_01754815 NA other upstream 702054 1753916 ~ 1754980 (+)
G408910 NA other upstream 826121 1633030 ~ 1634969 (+)
G408498 NA other upstream 1440356 1017067 ~ 1020734 (+)
G408510 NA other upstream 1483991 976600 ~ 977099 (+)
G409984 NA other downstream 809706 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1439209 3901148 ~ 3902892 (+)
G410382 NA other downstream 1661719 4123698 ~ 4124416 (+)
G410388 NA other downstream 1733667 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 3429088 5891021 ~ 5892824 (+)

Expression


Co-expression Network