G409246


Basic Information

Item Value
gene id G409246
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2585699 ~ 2585913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU470218
GCCAGTCCCTTTGCCAGACTGGCGACAAGAGCTTCAGAAAAATAAATGCCAAAAATGTCAACATGATATGTAGCCTCAAGCTTTGCAAGCAGTCCATCAACAACACTCTGTAGAAGATGGTATGGCAAAGTTAAACCTTGAGAGGCTTCTTCTTCTGTTCCTCGCTGGCTGCTTCTTTCAAATGGAGCTTCATCATGTACATCCTCAATCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU470218 True 215 lncRNA 0.44 1 2585699 2585913

Neighbor

gene id symbol gene type direction distance location
CI01000300_02573883_02577623 NA coding upstream 8076 2572591 ~ 2577623 (+)
CI01000300_02553990_02570561 SLC24A2 coding upstream 14766 2553473 ~ 2570933 (+)
CI01000300_02529181_02537776 TSPAN5.S, TSPAN5.L, TSPAN5A, TSPAN5B, TSPAN5, TSN5 coding upstream 47923 2529181 ~ 2537776 (+)
CI01000300_02481007_02486342 SNX8B coding upstream 98632 2478874 ~ 2487067 (+)
CI01000300_02477372_02477542 NA coding upstream 108150 2477311 ~ 2477549 (+)
CI01000300_02591604_02607183 XPA coding downstream 5691 2591604 ~ 2607183 (+)
CI01000300_02636916_02637474 NA coding downstream 50960 2636873 ~ 2637668 (+)
CI01000300_02658543_02666317 STRA6L coding downstream 72630 2658543 ~ 2666738 (+)
CI01000300_02668633_02682257 TDRD7A coding downstream 82720 2668633 ~ 2682738 (+)
CI01000300_02686699_02695556 TMOD1 coding downstream 100786 2686699 ~ 2696028 (+)
G409172 NA non-coding upstream 80198 2493449 ~ 2505501 (+)
G409205 NA non-coding upstream 120588 2464479 ~ 2465111 (+)
G409174 NA non-coding upstream 123720 2461090 ~ 2461979 (+)
G409155 NA non-coding upstream 178843 2406511 ~ 2406856 (+)
CI01000300_02356651_02369301 EIF3B non-coding upstream 215064 2356396 ~ 2370981 (+)
G409251 NA non-coding downstream 15828 2601741 ~ 2601964 (+)
G409163 NA non-coding downstream 35125 2621038 ~ 2630438 (+)
G409188 NA non-coding downstream 53609 2639522 ~ 2639910 (+)
G409273 NA non-coding downstream 124760 2710673 ~ 2710889 (+)
CI01000300_02313596_02320912 NA other upstream 271805 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 826663 1753916 ~ 1754980 (+)
G408910 NA other upstream 950730 1633030 ~ 1634969 (+)
G408498 NA other upstream 1564965 1017067 ~ 1020734 (+)
G408510 NA other upstream 1608600 976600 ~ 977099 (+)
G409984 NA other downstream 685772 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1315275 3901148 ~ 3902892 (+)
G410382 NA other downstream 1537785 4123698 ~ 4124416 (+)
G410388 NA other downstream 1609733 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 3305154 5891021 ~ 5892824 (+)

Expression


Co-expression Network