G409188


Basic Information

Item Value
gene id G409188
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2639522 ~ 2639910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU470157
TGCAAATGTTTATACAAACATTAAAAAAATGACAATATTGGCTTATTTTACATTTTCATGATTCTGAGAAAAACATTCTAATGATTAGAGTAGGCACTATTAATGAGTAGTAGTTTTCTTTTCTTTTGATTGCATTGTGGGCCATTAGAAGATAGATGAACATTCTGATGGCATGACTGTCTTATTGTGTAGATTTATTAGATGATATTAAAATTCCAGGCTTTTAAACATTCTTGTTTCTTTGCTTTACCAGTCAGTACCAGTTTGGGGTCAGTAATTTTTTTTTTTTAAAGAAATTTATGCATTAAAATTATGTAATGCACAGTAAAAACATTTATAATGTTACAAAAGATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU470157 True 389 lncRNA 0.27 1 2639522 2639910

Neighbor

gene id symbol gene type direction distance location
CI01000300_02636916_02637474 NA coding upstream 1878 2636873 ~ 2637668 (+)
CI01000300_02591604_02607183 XPA coding upstream 32339 2591604 ~ 2607183 (+)
CI01000300_02573883_02577623 NA coding upstream 61899 2572591 ~ 2577623 (+)
CI01000300_02553990_02570561 SLC24A2 coding upstream 68589 2553473 ~ 2570933 (+)
CI01000300_02529181_02537776 TSPAN5.S, TSPAN5.L, TSPAN5A, TSPAN5B, TSPAN5, TSN5 coding upstream 101746 2529181 ~ 2537776 (+)
CI01000300_02658543_02666317 STRA6L coding downstream 18633 2658543 ~ 2666738 (+)
CI01000300_02668633_02682257 TDRD7A coding downstream 28723 2668633 ~ 2682738 (+)
CI01000300_02686699_02695556 TMOD1 coding downstream 46789 2686699 ~ 2696028 (+)
CI01000300_02723637_02737142 GNE coding downstream 83727 2723637 ~ 2737891 (+)
CI01000300_02738497_02743503 NANS, SIAS, NANSA coding downstream 98587 2738497 ~ 2743543 (+)
G409163 NA non-coding upstream 9084 2621038 ~ 2630438 (+)
G409251 NA non-coding upstream 37558 2601741 ~ 2601964 (+)
G409246 NA non-coding upstream 53609 2585699 ~ 2585913 (+)
G409172 NA non-coding upstream 134021 2493449 ~ 2505501 (+)
G409273 NA non-coding downstream 70763 2710673 ~ 2710889 (+)
G409284 NA non-coding downstream 136237 2776147 ~ 2776359 (+)
G409292 NA non-coding downstream 152404 2792314 ~ 2792522 (+)
G409294 NA non-coding downstream 161379 2801289 ~ 2801570 (+)
G409295 NA non-coding downstream 180615 2820525 ~ 2820766 (+)
CI01000300_02313596_02320912 NA other upstream 325628 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 880486 1753916 ~ 1754980 (+)
G408910 NA other upstream 1004553 1633030 ~ 1634969 (+)
G408498 NA other upstream 1618788 1017067 ~ 1020734 (+)
G408510 NA other upstream 1662423 976600 ~ 977099 (+)
G409984 NA other downstream 631775 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1261278 3901148 ~ 3902892 (+)
G410382 NA other downstream 1483788 4123698 ~ 4124416 (+)
G410388 NA other downstream 1555736 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 3251157 5891021 ~ 5892824 (+)

Expression


Co-expression Network