G410320


Basic Information

Item Value
gene id G410320
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3916761 ~ 3938947 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU471399
AAAAGATTACTTTTTTTATTACATTTTATTAAAAAAACAAACAAGCAAGGTGAGAAAAAGTAATGCAGAAGTAACGTAACGCATTACTTTCCATAAAAAAGTAAACTAAGCAACACAATTAGTTACTTTTTTAGGGAGTAAAGCAATATTGTAATGCATTACTTCTAAAAGTTACTTTCCCCCAACACTGGTGGTCACCAGTATAGGTGTGTTTGTCACAAGACCAAATTAAAATTCATACTGAACTATGTCTTTTCATCAAACAACGTCGGTGAGTTAATTTAAGATAGATTTATATTATAGATTTCCTTACTGGTTAATGTATTAATTTTTCAATTTAGAATCATTTTTAAGGAAGGAACCTCGTACAATTTTGGAACAACATGAGGATGAGAAACTTTTCATTTTTGGGTGAACTATCCCTTTAAGAATGAACTTTTGGTTATGCATTACCAATGTAATTCCTGTCCCTTTTTGTTGTCCTTGCAAAAATTACCAGGTTTACCAGCTTTATGTGGTTATGAGAGGCCAGGAGTTGAAAAAAAAATGATGTATGATTGCACAGACAAGATTAATAACTAATTTAATCAGATTTATTATTTTCCTTTTAACATGTATAATGTTGTTTTGGCTATACTTTCAAAACTTTGAATTTCAGTTATTCAAATTTCAATTGCTTTCACACTCCCTAGACTTCCATTGTAAGTGCATCAACATAGTTGAGGATGTTTAAAAATTATGTTTTGTGCTAAACAACATGCCAAATAGCTTAACTTTTATTGAATCTGGAACATTCCAGTATGTACCAGCTAGTAAGTGGATAAATCATTTCTAAATGTTAATCTCAGCACTCTGTGTTTTCGGTGACCACACAGGTGTACATGTAAGAAAGAACACAGCGAGTTATCTTTCATTTAAGGTGCCATTCACCTTATGGGTGACTATTTGTTTGGTGTAGATGTAATGAATTGTTGGGTTGTCTGTGTAGACTATGACACGGAGGTCAGTGATTGTTTTTGCTATATGAAAAAGGCTGAATGAATGTAACTGTCAAACATGTGCTTTTAATGAATCCATTTTTAAAGTGTTATGATGTTAACGGGGTGCTCTCAAACTGACGAGCGAGCTTGCTTGCTTGCTTGCTTTCTCATTTTCCTTAACTTCGCCCCTTTTCTGTCTTTTCCGGTGTTCACGTGTTTCCCATTTTTGTAGTACTCTTTGCTCTACATATACTGAGGCTGTGCCTCTTACAATCAGTCTCTTTACTCTTATTTTTACATTTGTAGTTCATTCACATCATTTTTGTACCGTGAGACGATGCTTCTCTGCTCTTTTTCACTCTGTTCCTCTCTTTCTCTCTCTCACTCTTTCGTTCTCTTACATCCTGTTACCATGGCGATAGGCCTTCTGCCATTATGAATTCTCTCATGCTTTCCTCTCAGACATGCAGTGAAACACACACACTCACATTCACAATGCAACCAGGGAATAATGGCTTGAGTTTTTCAGGGCACACACACACTCGTTCTCACACATACACAAATAGGCCTATACATGCAAGCATACACACAAAACCGCATGTTTATCATTATCCAGTGTTACTAATGTGTATATCTATGATGCCTAAACATATTCTATTGACACTTAATGGAAAAATAAAAGAGGCAAATGGAGGAATGTGATTAAATTAATATGATCTCAGTATACCCACTTAGATTATATCGTTTTTTGTCATTGTGCTGTTTCTCAGTCTCTCTGTCAGCTTCTGTGTATTTAACATACACACACACACACAAATCTGACATGCTTATAGTGATATTCTTTAATTCACTTTTACATTTTCACAAAAATAAAAGTATTATCACAGAGATATTGTAAACACGTTTTATATATACTTGTCATAGGACATTTAAGGAAAACATCTGTATGGAGATGGCTTTTCCATTTAACAGTGACATCATCTCAGTGCGACAATTTGTGCAGGCTGTGTGGGTGTATGTAGATTTTTATGAATAATGTAGACTAATTAAAAAAACAAACAAAAAAACAATATTTAAACTAACAAATAATAGATAAGGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU471399 True 2080 lncRNA 0.34 2 3916761 3938947

Neighbor

gene id symbol gene type direction distance location
CI01000300_03901275_03902800 NA coding upstream 13869 3901148 ~ 3902892 (+)
CI01000300_03773519_03831065 NA coding upstream 85339 3773362 ~ 3831422 (+)
CI01000300_03769789_03773233 NA coding upstream 143499 3768199 ~ 3773262 (+)
CI01000300_03752633_03755353 NA coding upstream 159901 3752633 ~ 3756860 (+)
CI01000300_03744731_03749017 NA coding upstream 167738 3744410 ~ 3749023 (+)
CI01000300_03954605_03969070 CRMP1 coding downstream 15658 3954605 ~ 3970439 (+)
CI01000300_03972562_03976190 NA coding downstream 33615 3972562 ~ 3976225 (+)
CI01000300_03981015_03991839 NA coding downstream 42068 3981015 ~ 3992010 (+)
CI01000300_03994394_03997804 CHIC2 coding downstream 55447 3994394 ~ 3998763 (+)
CI01000300_04008515_04015444 SLC34A2A coding downstream 68030 4006977 ~ 4015556 (+)
G410345 NA non-coding upstream 2768 3911374 ~ 3913993 (+)
G410335 NA non-coding upstream 39725 3876685 ~ 3877036 (+)
G410334 NA non-coding upstream 40659 3875892 ~ 3876102 (+)
G410263 NA non-coding upstream 198019 3707467 ~ 3718742 (+)
G410253 NA non-coding upstream 332647 3583880 ~ 3584114 (+)
G410323 NA non-coding downstream 90 3939037 ~ 3939682 (+)
G410353 NA non-coding downstream 13883 3952830 ~ 3953045 (+)
G410354 NA non-coding downstream 14229 3953176 ~ 3953414 (+)
G410359 NA non-coding downstream 40097 3979044 ~ 3979269 (+)
G410366 NA non-coding downstream 80589 4019536 ~ 4019741 (+)
G409984 NA other upstream 644363 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1602867 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2157725 1753916 ~ 1754980 (+)
G408910 NA other upstream 2281792 1633030 ~ 1634969 (+)
G410382 NA other downstream 184751 4123698 ~ 4124416 (+)
G410388 NA other downstream 256699 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1952120 5891021 ~ 5892824 (+)
G411777 NA other downstream 2530298 6469245 ~ 6469705 (+)
G413459 NA other downstream 5005536 8857687 ~ 8948603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G2342 NA non-coding NC_047595.1 CM018541.1 4380229 ~ 4380455 (+)
bowfin (Amia calva) G2337 NA non-coding CM030121.1 CM030121.1 13507892 ~ 13508930 (-)