G410323


Basic Information

Item Value
gene id G410323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3939037 ~ 3939682 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU471402
CATTCAAAAATGGGAATAAAGATCCATTGCACATGGATCGTTATCATAAATTTGTGCTTTAATCATTTGGGTTGCAAAGGCTGAATTTCTGAAGCTTAAAAAAATGTAAAAGGTCAGAAATGGTGGTTCTTAGATCAAATCTGGTGGTTAAATAGATAAGAAAAAAAAAAAAAGAAAAGAAAGGAAATGCCTAGAAATATCAAACAAAACCCTAACCTACTTTGGCACTGGACAAAAAATGGATGCTTCACATAGAACATGTTTTTCTGCTGCGCTGCTTTTTAATTGTTTTTCTATATAAACATCTCAGTTTTTCAGCATCTTGCGCATGCTGGATTTTAAAAGCAGAGAATTCTAATTTCAGCAAAGCTTGCTAAAAAAACATGGTGAATAAAATATGGAATGAAACGCTTTAAACTCATTGGATAATAAATAATTAATTTGTAAATGACAGAATTTTAATTTCTTTAACAAACTGTTTGCTATAATGAAATGCAAAGCATTTTATAGTGTACATTAAAACAGAACTGTCATGAAACTTTTAACTCCATAATTAGGGCTGTGACGGTGGCAATTTTTTACTACCGCGGTGGGAAATCACCAACAACCGCCGGTGTTGCGGTGGTGGGGTCCGGGTTGGTTTTAN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU471402 True 646 lncRNA 0.33 1 3939037 3939682

Neighbor

gene id symbol gene type direction distance location
CI01000300_03924558_03934407 PPP2R2CA, PPP2R2C coding upstream 3677 3924558 ~ 3935360 (+)
CI01000300_03901275_03902800 NA coding upstream 36145 3901148 ~ 3902892 (+)
CI01000300_03773519_03831065 NA coding upstream 107615 3773362 ~ 3831422 (+)
CI01000300_03769789_03773233 NA coding upstream 165775 3768199 ~ 3773262 (+)
CI01000300_03752633_03755353 NA coding upstream 182177 3752633 ~ 3756860 (+)
CI01000300_03954605_03969070 CRMP1 coding downstream 14923 3954605 ~ 3970439 (+)
CI01000300_03972562_03976190 NA coding downstream 32880 3972562 ~ 3976225 (+)
CI01000300_03981015_03991839 NA coding downstream 41333 3981015 ~ 3992010 (+)
CI01000300_03994394_03997804 CHIC2 coding downstream 54712 3994394 ~ 3998763 (+)
CI01000300_04008515_04015444 SLC34A2A coding downstream 67295 4006977 ~ 4015556 (+)
G410320 NA non-coding upstream 90 3916761 ~ 3938947 (+)
G410345 NA non-coding upstream 25044 3911374 ~ 3913993 (+)
G410335 NA non-coding upstream 62001 3876685 ~ 3877036 (+)
G410334 NA non-coding upstream 62935 3875892 ~ 3876102 (+)
G410263 NA non-coding upstream 220295 3707467 ~ 3718742 (+)
G410353 NA non-coding downstream 13148 3952830 ~ 3953045 (+)
G410354 NA non-coding downstream 13494 3953176 ~ 3953414 (+)
G410359 NA non-coding downstream 39362 3979044 ~ 3979269 (+)
G410366 NA non-coding downstream 79854 4019536 ~ 4019741 (+)
G410383 NA non-coding downstream 110765 4050447 ~ 4053321 (+)
G409984 NA other upstream 666639 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1625143 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2180001 1753916 ~ 1754980 (+)
G408910 NA other upstream 2304068 1633030 ~ 1634969 (+)
G410382 NA other downstream 184016 4123698 ~ 4124416 (+)
G410388 NA other downstream 255964 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1951385 5891021 ~ 5892824 (+)
G411777 NA other downstream 2529563 6469245 ~ 6469705 (+)
G413459 NA other downstream 5004801 8857687 ~ 8948603 (+)

Expression


Co-expression Network