G410383


Basic Information

Item Value
gene id G410383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4050447 ~ 4053321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU471473
AGCTTTCGTTTGTGCTCTGACAGCCGCAATACCACCCCGAACTCTGTGAGTGCGTGTTAGAAATCAGGAATGGTGAGAACACATAGTGCTTGGTATGTTTTTCGTCTTCAAACCAAACTTGAGTCTTCAGCCGACAAAGTAGAGTAGACAGTCTTTAGTGACTGTTCGAACGCATTCAACCACATCAGCATTTCCACGACGAAAGCAATCCGGTCAAATGCGTTTTCGACTACCTCTGTAAGGCCCTGTTTCCTTCTGGTAATAAGATGCATTTTGGTCGGTCGGATCACAAGTGGACAATGCTAAATACAGGTGTAAACGAGGTGTAAAACATTTTGAGCTCGTCCACTTTTGACCACTTCCAAAGGTAGTCGAAAACGCATTAGACCGGATTGTTTTCATAGTGGAAATGCTCTTGTGGTTGAATGTTTCAACAGCCACAAAAAACCGCCCTCTCTCCGACTACTGACCTAATGCATAAGGTAAGCACGCGCTAGCCAGGCGGGATTTAGACTTTGTCAGCTGAAGACCCGTTTGGTTTGAAGACGAAAAACGTACCAAGCACAATGTTCTTCACCATTCCTGATTTCTAACACACGCTCACCGCGATCGGACGGTCTTGCAGCTGTCAGGGCAGAAACGAAAGCTGCTGCTCTCCGTATGTTTTCCGTTATCTCCGGATGCATTCATATGTAAATTGCGTGAGCTTATTTTGTTCATTAGATCAAAAGATCTGAAAAACCCATACATTTACCACCGTCCCCTCGAAGAAATCAAGACAAAAGTGGTTGAAAGTGGACAAAAGAGACAGATTAAAATATCAGGTTGAAACGGGTATGTGTCTCCCTCGTCCACTTGTGATCTGACTGACCAAAACGCATCTTAATACCAGGTGGAAACAGGGCGTTTTGGTTGATCTGATCATAAGTGGATGAGGGAGACACATTCCTGTTTACACTTGGTATTTTAATCCGTCTCTGTTGTCCACTTTCTACCACTTCTATCCTGATTTCTTTCGATCTAATGGACAAAATAAGCTTGTGCAATTTACATATGAATGCGCCCATGATGGAAAAACATATGGATGGGCAGCGGCTTTCGTTTCTGCTCTGACAGCCGCAAGACCGGCCGAACGCTGTGAGTGTGTGTTAGAAATCAAGAATAGTGAGAGAACATTGTGCTTGGTATGTTTTTCGTCTTCAAACCAAAGTTGGGCCTTCAGTCGACAAAGTTTAGATCCTGTCTGGCTAGTGTGATTTCCATAATGTTTACGCATTGTCAATAGGTGGAGAGTAGGCGGTCTTTAGTGGCTGTTCAACCACATGAGCGTTTCCACTACGAAAGCAATCTGGTTGAATGCGTTTTCGACTGAAAGTGATTGAAAGTGGACAAATTCAAAACGTTTTAAGGCAGGAACACACCAAGCCGACGCCGACGAACTAGTGGCGACGAAAGCAGACTGCGGGGTTGGCTCACGTCGGTAGCGTCTGGGTCCAAAGTTGCCCTGACACACCAAACCGACGCTCGACACCTGACGGCCAAGTAGCACGTCATTCTGCGCCTGCGCAAGATGAAATGCCTTTCCGTACCAGCAGGTGGCAGTAGCTTCATTTTCCAAACTGAGCTGGTCCAGCATTATCATACAGGTATAAATTCCTTTTTAATTAATCATTAAATCGTTTAAAAGGTTTGAACATGCTAGTTCAACATAAATATTCATTACTACTGGAGCTGCCAGTTTGCTACATTTCAAAAGATTATTAAACAGTAGCACAAACTATGCGAAATCGGCAGCCCTTCCGGTGCACTCAGTGTCCGAATTCACTCACTCGTTTCATTTACTCCTTCAAGTGGACTATATTAGTGGAGTAATGTAGGGAATAGTGAATGAGGGTATAGGGGGCGATTTCGAACGCAGCAACTGAGAAAACTTAGTCGGCCGACGAACAAAAACTGCCCGACGGCCGACTGTCGTCCACTTGTGATCCGATCAACCAAAACGCATCTTAATACCAGGTGGAAACAGGGCCTTAATTCTTATTTATTTGATTGACTTGTTTGCACAAAAATTCAGAAAAGAAAATGAAGGCAAGCAACAGAAGACAAAGCAAATCCAAATAATTACTAAAGGTTGACTAATACACTGTAAATCTACTGCAGGATGAGCCTATTATTAATAAATGTGTGTTTTAATATATTGGACTTAATACAAATGAAGCATTAATTAATTATTTAATAAAGACTTATTTAATCCAATTTGGAGTCAAGCAATGATCAAATAGGACTATATTACATTTTTAGTATTTTTCCTCGTCCTTATCACTTTAAGTTAAAAAATGTCATTGAAGGAGGATGATATTTGTATTTATTTTAACTGTTATATATTTGTCATCAAACACTGACAATTCTTTTCCAGACTCTACTGTCACTTTTGACCTTGACCGTACAGTTTTTATGTTTTTAAGTATTTTAAGTTCTTAAAAGTGTCGGTCTGGTTTTATTGTACAGCACTTTGGGCAACATTTGCTTTCCAGTGTGCAGTATAATAAATTTGACTTGGAGGAAAATTCTTCTTGAAATGACGTTTATTTAAATGTCATTTCAAATATTTTGTAGCATCCTGCCCTTTTTAATTCTACTGTATATGTTCTTGTGCAAATATAAAATATAAACCACATTTAAAATAAATGTAAATCCAAATGTTTAACCATTACTGGAAATATACATCCCAGCAGTCAGGAGTGTACAGATCCTTATAACCTAAAAAACAGCAGGAATATGATCTGAAGCAATAGCAAATAAACAAGATATTCACAAAGACACCTGTAGGCCTATTGTTTTGTTGTTGTTGTTTCCGGAGATATGTTAATATGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU471473 True 2875 lncRNA 0.40 1 4050447 4053321

Neighbor

gene id symbol gene type direction distance location
CI01000300_04035454_04049805 STIM2A coding upstream 626 4034317 ~ 4049821 (+)
CI01000300_04021130_04027987 RBPJ.S, RBPJ, RBPJA coding upstream 20838 4019875 ~ 4029609 (+)
CI01000300_04008515_04015444 SLC34A2A coding upstream 34891 4006977 ~ 4015556 (+)
CI01000300_03994394_03997804 CHIC2 coding upstream 51684 3994394 ~ 3998763 (+)
CI01000300_03981015_03991839 NA coding upstream 58437 3981015 ~ 3992010 (+)
CI01000300_04054526_04057476 NA coding downstream 177 4053498 ~ 4057513 (+)
CI01000300_04100876_04103178 NA coding downstream 47555 4100876 ~ 4104415 (+)
CI01000300_04105718_04107800 NA coding downstream 52397 4105718 ~ 4107849 (+)
CI01000300_04211928_04219961 NA coding downstream 157848 4211169 ~ 4220143 (+)
CI01000300_04391216_04429569 PCDH7A coding downstream 337437 4390758 ~ 4430154 (+)
G410366 NA non-coding upstream 30706 4019536 ~ 4019741 (+)
G410359 NA non-coding upstream 71178 3979044 ~ 3979269 (+)
G410354 NA non-coding upstream 97033 3953176 ~ 3953414 (+)
G410353 NA non-coding upstream 97402 3952830 ~ 3953045 (+)
G410323 NA non-coding upstream 110765 3939037 ~ 3939682 (+)
G410368 NA non-coding downstream 29697 4083018 ~ 4085182 (+)
G410375 NA non-coding downstream 73855 4127176 ~ 4129355 (+)
G410649 NA non-coding downstream 216994 4270315 ~ 4270720 (+)
G410659 NA non-coding downstream 254249 4307570 ~ 4307813 (+)
G410710 NA non-coding downstream 351480 4404801 ~ 4407968 (+)
CI01000300_03901275_03902800 NA other upstream 148296 3901148 ~ 3902892 (+)
G409984 NA other upstream 778049 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1736553 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2291411 1753916 ~ 1754980 (+)
G408910 NA other upstream 2415478 1633030 ~ 1634969 (+)
G410382 NA other downstream 70377 4123698 ~ 4124416 (+)
G410388 NA other downstream 142325 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1837746 5891021 ~ 5892824 (+)
G411777 NA other downstream 2415924 6469245 ~ 6469705 (+)
G413459 NA other downstream 4891162 8857687 ~ 8948603 (+)

Expression


Co-expression Network