G410382


Basic Information

Item Value
gene id G410382
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4123698 ~ 4124416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU471472
AGACCAGGAGACAACATCACTCTCTACTGTGATCACTCTGTAACTCATGGTTTCCGCTTTGTATGGATAAGAAACTGCTCTCATGAAAATCAACCCTCTCTCGAAATGGATCATACAAAATGGTTCCGGAACACATTAAAGCGTTTCAGCTCTGTCTACAACCGCTCCAGTAATTCTTATGATCTACATATTACTAACATCAGTGTCTCTGATCTGGGACTGTATTACTGTGGAGAAGTAGAGAATAAGGTATATAAAGATGAAAACGGCATCATCTCCTCAACTGAAGTGTACTATTATGGAAACCAAACAACTCGTCTCTCTTTTGCAGAGGAAGTAACTTCATGTTCTGGACTCTTGAACATCACCTCCACTCCTCGTGTATCAGACTGTGTTCTCTGCTGGACGCTGCTGTTCAGTGTGTGTCCGGTGTGTGTTCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU471472 True 442 TUCP 0.43 2 4123698 4124416

Neighbor

gene id symbol gene type direction distance location
CI01000300_04105718_04107800 NA coding upstream 15849 4105718 ~ 4107849 (+)
CI01000300_04100876_04103178 NA coding upstream 19283 4100876 ~ 4104415 (+)
CI01000300_04054526_04057476 NA coding upstream 66185 4053498 ~ 4057513 (+)
CI01000300_04035454_04049805 STIM2A coding upstream 73877 4034317 ~ 4049821 (+)
CI01000300_04021130_04027987 RBPJ.S, RBPJ, RBPJA coding upstream 94089 4019875 ~ 4029609 (+)
CI01000300_04211928_04219961 NA coding downstream 86753 4211169 ~ 4220143 (+)
CI01000300_04391216_04429569 PCDH7A coding downstream 266342 4390758 ~ 4430154 (+)
CI01000300_04439356_04442462 NA coding downstream 314802 4439218 ~ 4442690 (+)
CI01000300_04443587_04462530 HGSNAT coding downstream 319171 4443587 ~ 4462719 (+)
CI01000300_04465330_04479739 PI4K2B coding downstream 340682 4465098 ~ 4481238 (+)
G410368 NA non-coding upstream 38516 4083018 ~ 4085182 (+)
G410383 NA non-coding upstream 70377 4050447 ~ 4053321 (+)
G410366 NA non-coding upstream 103957 4019536 ~ 4019741 (+)
G410359 NA non-coding upstream 144429 3979044 ~ 3979269 (+)
G410354 NA non-coding upstream 170284 3953176 ~ 3953414 (+)
G410375 NA non-coding downstream 2760 4127176 ~ 4129355 (+)
G410649 NA non-coding downstream 145899 4270315 ~ 4270720 (+)
G410659 NA non-coding downstream 183154 4307570 ~ 4307813 (+)
G410710 NA non-coding downstream 280385 4404801 ~ 4407968 (+)
G410733 NA non-coding downstream 404616 4529032 ~ 4560250 (+)
CI01000300_03901275_03902800 NA other upstream 221547 3901148 ~ 3902892 (+)
G409984 NA other upstream 851300 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1809804 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2364662 1753916 ~ 1754980 (+)
G408910 NA other upstream 2488729 1633030 ~ 1634969 (+)
G410388 NA other downstream 71230 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1766651 5891021 ~ 5892824 (+)
G411777 NA other downstream 2344829 6469245 ~ 6469705 (+)
G413459 NA other downstream 4820067 8857687 ~ 8948603 (+)
G414249 NA other downstream 6245495 10369911 ~ 10373898 (+)

Expression


Co-expression Network