G410980


Basic Information

Item Value
gene id G410980
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5095875 ~ 5096331 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU472126
TAGAATAGTTTATAAGAGTACAATTATGAGCATAATGAGGCTGTAAAAGCAGACTGAGCTTACCTTTTCGCCGTGATGACCTTTAATGTCCCTGACTGCCTGTGCAGTCCCATTTAACCACTTGTTAGCAACCTTTTTCAAAACACATAACAGCTTAAAAAAAATCACAAGTGGGGTAATACTGATGCATTTTATGTCATAGAATAAAACGTGAAACTGTCTTGAGCTTGCATTCACCACAGACCTTATTTCAGCCATTTAACCAAAATCCCATTCAAAAAACCCATTGACTTCGGGGCGATGGAACCAGAAGTGCTAAAATGCTAACTCACTTCCGCATTTTGGCCTACAAAGTGATGTCATACCTGCACCACTCTATTCGAGAGAGAAAACATCAGGATCGATCCAGATTCATTGTGTCGAGAATCGAAAAACAATGTATTGTCTCAGCCCTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472126 True 457 lncRNA 0.40 1 5095875 5096331

Neighbor

gene id symbol gene type direction distance location
CI01000300_05031151_05064873 TUSC3 coding upstream 30311 5030948 ~ 5065564 (+)
CI01000300_05022837_05027540 NA coding upstream 66960 5022837 ~ 5028915 (+)
CI01000300_04465330_04479739 PI4K2B coding upstream 614637 4465098 ~ 4481238 (+)
CI01000300_04443587_04462530 HGSNAT coding upstream 633156 4443587 ~ 4462719 (+)
CI01000300_04439356_04442462 NA coding upstream 653185 4439218 ~ 4442690 (+)
CI01000300_05176333_05206119 MICU3 coding downstream 80002 5176333 ~ 5207604 (+)
CI01000300_05217150_05224947 VPS37A coding downstream 119757 5216088 ~ 5225301 (+)
CI01000300_05259191_05302329 MTUS1 coding downstream 162275 5258606 ~ 5303111 (+)
CI01000300_05306807_05337120 PCM1 coding downstream 210476 5306807 ~ 5337206 (+)
CI01000300_05747200_05752154 FAT1, FAT1A coding downstream 650466 5746797 ~ 5752159 (+)
G410965 NA non-coding upstream 24032 5059895 ~ 5071843 (+)
G410820 NA non-coding upstream 296346 4799284 ~ 4799529 (+)
G410778 NA non-coding upstream 416371 4677548 ~ 4679504 (+)
G410776 NA non-coding upstream 437084 4656770 ~ 4658791 (+)
G410733 NA non-coding upstream 535625 4529032 ~ 4560250 (+)
G411144 NA non-coding downstream 43672 5140003 ~ 5140219 (+)
G411162 NA non-coding downstream 56938 5153269 ~ 5153581 (+)
G411168 NA non-coding downstream 75104 5171435 ~ 5172438 (+)
G411169 NA non-coding downstream 76859 5173190 ~ 5174108 (+)
G411174 NA non-coding downstream 102708 5199039 ~ 5199252 (+)
G410388 NA other upstream 899320 4195646 ~ 4196555 (+)
G410382 NA other upstream 971459 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 1193724 3901148 ~ 3902892 (+)
G409984 NA other upstream 1823477 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 2781981 2312515 ~ 2321088 (+)
CI01000300_05891147_05892754 HELT other downstream 794736 5891021 ~ 5892824 (+)
G411777 NA other downstream 1372914 6469245 ~ 6469705 (+)
G413459 NA other downstream 3848152 8857687 ~ 8948603 (+)
G414249 NA other downstream 5273580 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 5503605 10604458 ~ 10605033 (+)

Expression


Co-expression Network