Gene
RNA
| Item | Value |
|---|---|
| gene id | G411168 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 5171435 ~ 5172438 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU472346 | True | 1004 | lncRNA | 0.43 | 1 | 5171435 | 5172438 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000300_05031151_05064873 | TUSC3 | coding | upstream | 105871 | 5030948 ~ 5065564 (+) |
| CI01000300_05022837_05027540 | NA | coding | upstream | 142520 | 5022837 ~ 5028915 (+) |
| CI01000300_04465330_04479739 | PI4K2B | coding | upstream | 690197 | 4465098 ~ 4481238 (+) |
| CI01000300_04443587_04462530 | HGSNAT | coding | upstream | 708716 | 4443587 ~ 4462719 (+) |
| CI01000300_04439356_04442462 | NA | coding | upstream | 728745 | 4439218 ~ 4442690 (+) |
| CI01000300_05176333_05206119 | MICU3 | coding | downstream | 3895 | 5176333 ~ 5207604 (+) |
| CI01000300_05217150_05224947 | VPS37A | coding | downstream | 43650 | 5216088 ~ 5225301 (+) |
| CI01000300_05259191_05302329 | MTUS1 | coding | downstream | 86168 | 5258606 ~ 5303111 (+) |
| CI01000300_05306807_05337120 | PCM1 | coding | downstream | 134369 | 5306807 ~ 5337206 (+) |
| CI01000300_05747200_05752154 | FAT1, FAT1A | coding | downstream | 574359 | 5746797 ~ 5752159 (+) |
| G411162 | NA | non-coding | upstream | 17854 | 5153269 ~ 5153581 (+) |
| G411144 | NA | non-coding | upstream | 31216 | 5140003 ~ 5140219 (+) |
| G410980 | NA | non-coding | upstream | 75104 | 5095875 ~ 5096331 (+) |
| G410965 | NA | non-coding | upstream | 99592 | 5059895 ~ 5071843 (+) |
| G410820 | NA | non-coding | upstream | 371906 | 4799284 ~ 4799529 (+) |
| G411169 | NA | non-coding | downstream | 752 | 5173190 ~ 5174108 (+) |
| G411174 | NA | non-coding | downstream | 26601 | 5199039 ~ 5199252 (+) |
| G411152 | NA | non-coding | downstream | 29097 | 5201535 ~ 5201980 (+) |
| G411146 | NA | non-coding | downstream | 36395 | 5208833 ~ 5213005 (+) |
| G410388 | NA | other | upstream | 974880 | 4195646 ~ 4196555 (+) |
| G410382 | NA | other | upstream | 1047019 | 4123698 ~ 4124416 (+) |
| CI01000300_03901275_03902800 | NA | other | upstream | 1269284 | 3901148 ~ 3902892 (+) |
| G409984 | NA | other | upstream | 1899037 | 3271685 ~ 3272398 (+) |
| CI01000300_02313596_02320912 | NA | other | upstream | 2857541 | 2312515 ~ 2321088 (+) |
| CI01000300_05891147_05892754 | HELT | other | downstream | 718629 | 5891021 ~ 5892824 (+) |
| G411777 | NA | other | downstream | 1296807 | 6469245 ~ 6469705 (+) |
| G413459 | NA | other | downstream | 3772045 | 8857687 ~ 8948603 (+) |
| G414249 | NA | other | downstream | 5197473 | 10369911 ~ 10373898 (+) |
| CI01000300_10604458_10604787 | NA | other | downstream | 5427498 | 10604458 ~ 10605033 (+) |
