G411146


Basic Information

Item Value
gene id G411146
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5208833 ~ 5213005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU472320
TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTTCTTAAATTAACATTTTATGTTAGTTGAGTAAAACATTAGACTGAATTGATAATGGAAATTATTGGAGTTGTTTTCAGTGATAGTATAAAGTTATTAGATGTAGTTGTCATACAGTAGTATGTAATAGGTTGAAAATAAGTTTGTTATTGGTTAAATTACATATGGAATGTTGATATAGG
>TU472321
TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTTCTTAAATTAACATTTTATGTTAGTAAAATTAATTAGTAAACATTAGACTGAATTGATAATGGAAGTTATTGGAGTTGTGTCAGTGATAGTATGAAGTTATTAGATGTAGTTGTTATACAGTAGTATGTAATGTAGTAGGTTGAAAATAAGTTTGTTGTTGGTTAGATTACATCTGGAATGTTAATATAGGGGAAAGTTATCTTTAAAAAAGTGATTAATTACAATGTTGTTTTATTTAGTTACTTTTTAGAGAAGTAATGCATTACGCTAGTTTTGTGTTACTTTTTCACGCATGGGCTGGGTTTGCTTTGTTTTTTAAAAAAATTTTTTTTTTTTGGGCGAATGTTAAGGCCTCTTCACACCAAAAGAGAAATGAAATAGTCTGAAGTGGAAGGAAATGCATATTTACGCCTGTACAGTAGAGGGCGCAGCTCAAACAAACCTTTCTGCTGTGCTGCCAATCTGGATTAAAGAAGAACAGGATACAAGAGAAGGAAGTTCAACACTTTTATATCTAAATCTAAAGTAGGTTTTGCTTATTAGTATGGTTGAATTAGATCATTGAAGATCAGCAGCAAAGACATCGGTTAATAAAGTGAAATTAAATACATAAAGTATGTTTGTGTAATTTAATATAGTTAATTATTACAGGTTTGCATAAAATTCTGAGATTGCATTTCACTGTTTTTATTCGTTTTGAGGAATACTGAATATTTTCGTGCAAGTGAGATGAGTAAATGCATGTTCACATTTAGTCTACAACTACAATAACCATCATGTTTATACAGCGCAGATAACACCTCTGGACTTTATTTCTCTCAACATGAGGACAGGAGAGCTGTC
>TU472322
TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTGACTATACTTTCAGGGATCATTTCTATAGTTCTTAACTAGGAAGAGTATTGTGAAAGTGATGAGTCTCCCAAATCATGATGAAGAATTTTGA
>TU472323
TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTTCTTAAATTAACATTTTATGTTAGTAAAATTAATTAGTAAACATTAGACTGAATTGATAATGGAAGTTATTGGAGTTGTGTCAGTGATAGTATGAAGTTATTAGATGTAGTTGTTATACAGTAGTATGTAATGTAGTAGGTTGAAAATAAGTTTGTTGTTGGTTAGATTACATCTGGAATGTTAATATAGGGGAAAGTTATCTTTAAAAAAGTGATTAATTACAATGTTGTTTTATTTAGTTACTTTTTAGAGAAGTAATGCATTACGCTAGTTTTGTGTTACTTTTTCACGCATGGGCTGGGTTTGCTTTGTTTTTTAAAAAAATTTTTTTTTTTTGGGCGAATGTTAAGGCCTCTTCACACCAAAAGAGAAATGAAATAGTCTGAAGTGGAAGGAAATGCATATTTACGCCTGTACAGTAGAGGGCGCAGCTCAAACAAACCTTTCTGCTGTGCTGCCAATCTGGATTAAAGAAGAACAGGATACAAGAGAAGGAAGTTCAACACTTTTATATCTAAATCTAAAGTAGGTTTTGCTTATTAGTATGGTTGAATTAGATCATTGAAGATCAGCAGCAAAGACATCGGTTAATAAAGTGAAATTAAATACATAAAGTATGTTTGTGTAATTTAATATAGTTAATTATTACAGGTTTGCATAAAATTCTGAGATTGCATTTCACTGTTTTTATTCGTTTTGAGGAATACTGAATATTTTCGTGCAAGTGAGATGAGTAAATGCATGTTCACATTTAGTCTACAACTACAATAACCATCATGTTTATACAGCGCAGATAACACCTCTGGACTTTATTTCTCTCAACATGAGGACAGGAGAGCTGTCAGTCAATAAATGTGAAAAAGTAACTCTCCTGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGATGTGTGAAAATTAAGACTATACTTTCAGGGATCATTTCTATAGTTCTTAACTAGGAAGAGTATTGTGAAAGTGATGAGTCTCCCAAATCATGATGAAGAATTTTGA
>TU472324
TCTGTGAGACACCTAGTGTCAGAAGAGACTCGAGCTGGGTTTGGTGAGTGAAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGAAATGTATTGAGAAAGTGATGAGTCTCCCAAACCACGATGATGAGACGTGATACTCTTTTCTGAGCGTGAATCGGGTGTAGAGTAATGATTCAGTTCATAAGCTCTATATCATTGATGAACGTTCCTTTCTGTTTAATACGGTTAGGAGGAAAGGAGTATGATCAGAGTGGTTCTTAAATTAACATTTTATGTTAGTGAGTAAAACATTAGACTGAATTGATAATGGAAATTATTGGAGTTGTTTTCAGTGATAGTATAAAGTTATTAGATGTAGTTGTCATACAGTAGTATGTAATAGGTTGAAAATAAGTTTGTTATTGGTTAAATTACATATGGAATGTTGATATAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU472320 False 451 lncRNA 0.34 2 5208833 5210548
TU472321 False 1115 lncRNA 0.34 2 5208833 5211220
TU472322 False 363 lncRNA 0.39 2 5208833 5213005
TU472323 False 1288 lncRNA 0.34 3 5208833 5213005
TU472324 True 450 lncRNA 0.34 2 5208833 5210548

Neighbor

gene id symbol gene type direction distance location
CI01000300_05176333_05206119 MICU3 coding upstream 1229 5176333 ~ 5207604 (+)
CI01000300_05031151_05064873 TUSC3 coding upstream 143269 5030948 ~ 5065564 (+)
CI01000300_05022837_05027540 NA coding upstream 179918 5022837 ~ 5028915 (+)
CI01000300_04465330_04479739 PI4K2B coding upstream 727595 4465098 ~ 4481238 (+)
CI01000300_04443587_04462530 HGSNAT coding upstream 746114 4443587 ~ 4462719 (+)
CI01000300_05217150_05224947 VPS37A coding downstream 3083 5216088 ~ 5225301 (+)
CI01000300_05259191_05302329 MTUS1 coding downstream 45601 5258606 ~ 5303111 (+)
CI01000300_05306807_05337120 PCM1 coding downstream 93802 5306807 ~ 5337206 (+)
CI01000300_05747200_05752154 FAT1, FAT1A coding downstream 533792 5746797 ~ 5752159 (+)
CI01000300_05768567_05786736 FAT1, FAT1A coding downstream 555392 5768397 ~ 5786830 (+)
G411152 NA non-coding upstream 6853 5201535 ~ 5201980 (+)
G411174 NA non-coding upstream 9581 5199039 ~ 5199252 (+)
G411169 NA non-coding upstream 34725 5173190 ~ 5174108 (+)
G411168 NA non-coding upstream 36395 5171435 ~ 5172438 (+)
G411162 NA non-coding upstream 55252 5153269 ~ 5153581 (+)
G411279 NA non-coding downstream 215054 5428059 ~ 5428306 (+)
G411301 NA non-coding downstream 244946 5457951 ~ 5458151 (+)
G411305 NA non-coding downstream 255474 5468479 ~ 5468829 (+)
G411361 NA non-coding downstream 337973 5550978 ~ 5555910 (+)
G410388 NA other upstream 1012278 4195646 ~ 4196555 (+)
G410382 NA other upstream 1084417 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 1306682 3901148 ~ 3902892 (+)
G409984 NA other upstream 1936435 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 2894939 2312515 ~ 2321088 (+)
CI01000300_05891147_05892754 HELT other downstream 678062 5891021 ~ 5892824 (+)
G411777 NA other downstream 1256240 6469245 ~ 6469705 (+)
G413459 NA other downstream 3731478 8857687 ~ 8948603 (+)
G414249 NA other downstream 5156906 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 5386931 10604458 ~ 10605033 (+)

Expression


Co-expression Network