G412225


Basic Information

Item Value
gene id G412225
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 7968901 ~ 7970902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU473507
ATAACATAACATAAAATCTATGCTATCTATATGTCTGCATCAATCGATACGATAACACAGGATCTCACTCTGACAGATCCTCACTTACCTGCCGAATGGTGTCTCCCTCGTGGTTGCTGATTGTTATGCTGCGGTCTTCACTGCCTAACGCCAGAAGGTTGTGAGAGCTCCAACAGCCACATGTGATTTTCTTTGTATGCTTACCCAGAACAGGAATCTTGCGTGAAGTTTGCTGGTTGTAGATGAGAAGGTTTCCTTTAGATGTGCCAACAGCCAACAATGGCCCAGTTTTGGACCAGAGCAAGAAGGACATCTGATCTCTCATGCCACTGTCTAGCTGAGAGGTTTTGTTAACATTTGCATCCCACAAGTAAACGGAACTGGACTTTTCAGAAATCACAGCCAAGATATCACCATCTTTATCCCAGTCAAGAGATACACAATTCCCAGGGAGATTTAACTCATTGACCTTCTGTCCATGCCGATCAAAGATTTTTACAAAATTGTCAGGGCCTGCAACTGCAAGATAGTTTCCTACTGTTTTCTGCCATTTGTATTGCAAACATGATCCAGACCAGGACTTTTCTGACAGCGTGAAAACACGCTTCATTTTTGTGTGACGAAAACGTTACACTTCCCAGGGTGCTTCACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473507 True 653 lncRNA 0.43 6 7968901 7970902

Neighbor

gene id symbol gene type direction distance location
CI01000300_07843046_07844594 MED28 coding upstream 123912 7842381 ~ 7844989 (+)
CI01000300_07786299_07792403 NA coding upstream 176316 7786057 ~ 7792585 (+)
CI01000300_07272403_07311667 PRSS12 coding upstream 656936 7272403 ~ 7311965 (+)
CI01000300_07212456_07243544 APBB2B, APBB2 coding upstream 725221 7212456 ~ 7243680 (+)
CI01000300_07170775_07183983 UBA6 coding upstream 783820 7170775 ~ 7185081 (+)
CI01000300_07989533_07994134 PRIMPOL coding downstream 18631 7989533 ~ 7994436 (+)
CI01000300_08091709_08137762 PAX5 coding downstream 120681 8091583 ~ 8138748 (+)
CI01000300_08229980_08248846 KDM4C coding downstream 259078 8229980 ~ 8248846 (+)
CI01000300_08252260_08318173 DNAH6 coding downstream 281358 8252260 ~ 8318614 (+)
CI01000300_08319762_08322122 DNAH6 coding downstream 348860 8319762 ~ 8322294 (+)
G412209 NA non-coding upstream 21438 7946844 ~ 7947463 (+)
G412189 NA non-coding upstream 56527 7911611 ~ 7912374 (+)
G412149 NA non-coding upstream 61357 7854938 ~ 7907544 (+)
G412167 NA non-coding upstream 148803 7819774 ~ 7820098 (+)
G412056 NA non-coding upstream 162819 7717584 ~ 7806082 (+)
G412201 NA non-coding downstream 24026 7994928 ~ 7997335 (+)
G412214 NA non-coding downstream 33807 8004709 ~ 8008545 (+)
G412229 NA non-coding downstream 46069 8016971 ~ 8017214 (+)
G412230 NA non-coding downstream 49853 8020755 ~ 8021135 (+)
G412231 NA non-coding downstream 51401 8022303 ~ 8022526 (+)
G411777 NA other upstream 1499196 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 2076476 5891021 ~ 5892824 (+)
G410388 NA other upstream 3772346 4195646 ~ 4196555 (+)
G410382 NA other upstream 3844485 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 4066750 3901148 ~ 3902892 (+)
G413459 NA other downstream 973581 8857687 ~ 8948603 (+)
G414249 NA other downstream 2399009 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 2629034 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 2675289 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 3732582 11704476 ~ 11708351 (+)

Expression


Co-expression Network