G412230


Basic Information

Item Value
gene id G412230
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8020755 ~ 8021135 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU473517
CCCAACTTTGTGGGAACAATTTGGGGATGGCCCCTTCCTGTTCCAGCATGACTGCACACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGTGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCAATAGAACACCTTTGGGATGAATTAGAGCGGAAACTGCGAGCCAGGCCTTCTCGCCAACATCACTGCCTGACCTCACAAATGCGCTTCTAGAAGAATGGTCAAAAATTCCCATAAACACACTCCTAAACTTTGTGGAAAGCCTTCCCAGAAGAGTTGAGGCTGTAATAGCTGCAAAGGGTGGGCCAACTCCACATTAAACCCTACGGATTAAGAATGGGATCTCATTAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU473517 True 381 lncRNA 0.48 1 8020755 8021135

Neighbor

gene id symbol gene type direction distance location
CI01000300_07989533_07994134 PRIMPOL coding upstream 26319 7989533 ~ 7994436 (+)
CI01000300_07843046_07844594 MED28 coding upstream 175766 7842381 ~ 7844989 (+)
CI01000300_07786299_07792403 NA coding upstream 228170 7786057 ~ 7792585 (+)
CI01000300_07272403_07311667 PRSS12 coding upstream 708790 7272403 ~ 7311965 (+)
CI01000300_07212456_07243544 APBB2B, APBB2 coding upstream 777075 7212456 ~ 7243680 (+)
CI01000300_08091709_08137762 PAX5 coding downstream 70448 8091583 ~ 8138748 (+)
CI01000300_08229980_08248846 KDM4C coding downstream 208845 8229980 ~ 8248846 (+)
CI01000300_08252260_08318173 DNAH6 coding downstream 231125 8252260 ~ 8318614 (+)
CI01000300_08319762_08322122 DNAH6 coding downstream 298627 8319762 ~ 8322294 (+)
CI01000300_08567722_08574695 ANXA5B coding downstream 546587 8567722 ~ 8575613 (+)
G412229 NA non-coding upstream 3541 8016971 ~ 8017214 (+)
G412214 NA non-coding upstream 12210 8004709 ~ 8008545 (+)
G412201 NA non-coding upstream 23420 7994928 ~ 7997335 (+)
G412225 NA non-coding upstream 49853 7968901 ~ 7970902 (+)
G412209 NA non-coding upstream 73292 7946844 ~ 7947463 (+)
G412231 NA non-coding downstream 1168 8022303 ~ 8022526 (+)
G412234 NA non-coding downstream 2240 8023375 ~ 8023624 (+)
G412211 NA non-coding downstream 119398 8140533 ~ 8140866 (+)
G412283 NA non-coding downstream 131797 8152932 ~ 8153175 (+)
G412284 NA non-coding downstream 142221 8163356 ~ 8170744 (+)
G411777 NA other upstream 1551050 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 2128330 5891021 ~ 5892824 (+)
G410388 NA other upstream 3824200 4195646 ~ 4196555 (+)
G410382 NA other upstream 3896339 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 4118604 3901148 ~ 3902892 (+)
G413459 NA other downstream 923348 8857687 ~ 8948603 (+)
G414249 NA other downstream 2348776 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 2578801 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 2625056 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 3682349 11704476 ~ 11708351 (+)

Expression


Co-expression Network