G413459


Basic Information

Item Value
gene id G413459
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8857687 ~ 8948603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU474896
TATTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGAAAAATGGGAGGTGGTCTTTATTGACAGATTTTACAGAGACTAATCTTAGTCATCTTGCTGTTCGACCACTGTGCCCTTCTCACTAACATATATCCCATCAAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGTGCAGCTGATGAAGAGAACAAGAGAGAAAAAGAAAGATTTAAAAACATTGTAAAGGCAAACCAACT
>TU474894
ACCCCTTCTCATCTACCATACCCCATCATGCATTTGATAAAATTGTGTTAAAAACAATTGCACACAAGTATATGTTGTTGAAAAATGGGAGGTGGTCTTTATTGACAGATTTTACAGAGACTAATCTTAGTCATCTTGCTGTTCGACCACTGTGCCCTTCTCACTAACATATATCCCATCAAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGTGCAGCTGCTCTCGTGTTCTCTACGACTCAGGCTCCGTTACAGTGCCCTTCTCAGAGACGTAAATACCATCCAGGAACTTTCTGATATCCTTATTTTTCACTGTGGTTGCCTGCTGGATGAGGGCCGCTGAAACAAGAAAAGCTGGGGAGGTGAGGCATGCAGGCACACTAGACTTGCTTAACACCAGTCTCTCTCTCTCTCTCTCACACATACCCATAGCATACACCAGCTCTCTCACACACAACCCAATCAAGAACATTCTCTTCAATTACTATGCAACTAAGGGTTAAGGTTGTCAGGATAGGGGAAAAGGAGGCTAAACATGTCTGTTTCGCAGAAGTCTAAACACAATCAGGGCCTGCAGGTAAGAGCAAATTAACTCAGAGGATACAGGGATGCTCAGCTCTAACACAGATGGTGAGGGAGGGTACAGTTTAGTCTTAGATTCATGGGTTCCCACAATCAGTCCAGTAAAGGAAGAAA
>TU474897
ACCCCTTCTCATCTACCATACCCCATCATGCATTTGATAAAATTGTGTTAAAAACAATTGCACACAAGTATATGTTGTTGAAAAATGGGAGGTGGTCTTTATTGACAGATTTTACAGAGACTAATCTTAGTCATCTTGCTGTTCGACCACTGTGCCCTTCTCACTAACATATATCCCATCAAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGTGCAGCTGATGAAGAGAACTCTCGTGTTCTCTACGACTCAGGCTCCGTTACAGTGCCCTTCTCAGAGACGTAAATACCATCCAGGAACTTTCTGATATCCTTATTTTTCACTGTGGTTGCCTGCTGGATGAGGGCCGCTGAAACAAGAAAAGCTGGGGAGGTGAGGCATGCAGGCACACTAGACTTGCTTAACACCAGTCTCTCTCTCTCTCTCTCACACATACCCATAGCATACACCAGCTCTCTCACACACAACCCAATCAAGAACATTCTCTTCAATTACTATGCAACTAAGGGTTAAGGTTGTCAGGATAGGGGAAAAGGAGGCTAAACATGTCTGTTTCGCAGAAGTCTAAACACAATCAGGGCCTGCAGGTAAGAGCAAATTAACTCAGAGGATACAGGGATGCTCAGCTCTAACACAGATGGTGAGGGAGGGTACAGTTTAGTCTTAGATTCATGGGTTCCCACAATCAGTCCAGTAAAGGAAGAAA
>TU474898
ACCCCTTCTCATCTACCATACCCCATCATGCATTTGATAAAATTGTGTTAAAAACAATTGCACACAAGTATATGTTGTTGAAAAATGGGAGGTGGTCTTTATTGACAGATTTTACAGAGACTAATCTTAGTCATCTTGCTGTTCGACCACTGTGCCCTTCTCACTAACATATATCCCATCAAGGAACTTCCGGATGTCCTTCTTTCTCACAGTGGTGGCCTGCTGGATCAGTGCAGCTCGTGTTCTCTACGACTCAGGCTCCGTTACAGTGCCCTTCTCAGAGACGTAAATACCATCCAGGAACTTTCTGATATCCTTATTTTTCACTGTGGTTGCCTGCTGGATGAGGGCCGCTGATTTGACACCAGCTCAATGTCATTACCCTCTAGAACCAGCTCGTCTTTTTGAGCAGCAGACACTGCACATTGCACACCTATATTAAAAAAAAAAAAATAAAAAAAAACTTCATTCTGTAACCAGGCATGTCTGCAGCTAAATTAAGGGGTTTGCGGTGACAGACATTATGCCAATTCAGCCTTTACACATACCTGGTCTCATGCGGACACGGCGGATGTACTTCTCTCCCAAGAAGTTTCTGATCTCCACCAAAGAGCCGGTCTCCTGGATCACCACGTTAATGGGGAAATGGGCATATACAGATCGCATCTTGTATCTGAAGCCCAGGGTGACCCCCTTGATCATGTTCTGAACATGACTGCAGATGGTGCGGACTGTGGCCAACTCCTTCCTGTTACCCCACCACTTGTCCACTCGCAGCTTCTTGTGTTTCTTGCCCAACAGACTGAGCTCCAGGTTAATGTGGTTGAACTCCCGGCGGAGAACGCCACGGGGTCCCTTCACAGTAACTGTGCGGCCCTTGAGGGACACCTCAACGTTGTTGGGGATGTCCACTGTCTGGTTACTGAGAATGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU474896 False 283 lncRNA 0.33 3 8857687 8944779
TU474894 False 715 lncRNA 0.45 2 8944483 8945654
TU474897 False 725 lncRNA 0.45 2 8944483 8945654
TU474898 True 934 TUCP 0.47 6 8944483 8948603

Neighbor

gene id symbol gene type direction distance location
CI01000300_08713685_08718935 GTF2E2 coding upstream 137951 8713685 ~ 8719736 (+)
CI01000300_08599231_08604382 ZMYND10 coding upstream 252760 8599231 ~ 8604927 (+)
CI01000300_08567722_08574695 ANXA5B coding upstream 282098 8567722 ~ 8575613 (+)
CI01000300_08319762_08322122 DNAH6 coding upstream 535393 8319762 ~ 8322294 (+)
CI01000300_08252260_08318173 DNAH6 coding upstream 539073 8252260 ~ 8318614 (+)
CI01000300_08949418_08957810 LIAS coding downstream 3667 8949321 ~ 8957857 (+)
CI01000300_08979290_08987162 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding downstream 32579 8978233 ~ 8988778 (+)
CI01000300_09025773_09045147 RHOH, N4BP2 coding downstream 78795 9024449 ~ 9045662 (+)
CI01000300_09050912_09060586 CHRNA9 coding downstream 105258 9050912 ~ 9061185 (+)
CI01000300_09080472_09093223 NA coding downstream 134138 9079792 ~ 9093318 (+)
G413437 NA non-coding upstream 72362 8783940 ~ 8785325 (+)
G413409 NA non-coding upstream 116367 8740906 ~ 8741320 (+)
G413408 NA non-coding upstream 116783 8740601 ~ 8740904 (+)
G413405 NA non-coding upstream 118807 8738646 ~ 8738880 (+)
G413376 NA non-coding upstream 150335 8659048 ~ 8707352 (+)
G413523 NA non-coding downstream 31761 8977415 ~ 8977692 (+)
G413479 NA non-coding downstream 54440 9000094 ~ 9002141 (+)
G413549 NA non-coding downstream 133153 9078807 ~ 9079007 (+)
G411777 NA other upstream 2387982 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 2965262 5891021 ~ 5892824 (+)
G410388 NA other upstream 4661132 4195646 ~ 4196555 (+)
G410382 NA other upstream 4733271 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 4955536 3901148 ~ 3902892 (+)
G414249 NA other downstream 1424257 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 1654282 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 1700537 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 2757830 11704476 ~ 11708351 (+)
CI01000300_08917691_08926730 NA coding upstream 16606 8917691 ~ 8927877 (+)
CI01000300_08874463_08915149 NA coding upstream 29262 8874463 ~ 8915221 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G184657 NA non-coding NC_035917.1 CM008320.1 15573659 ~ 15634420 (+)