G415028



Basic Information


Item Value
gene id G415028
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 11200215 ~ 11287017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU476687
CATAAATCCTCGCTGTCCTGCTGAAGTTCGGTTTTGCGTTTTAACAAGTCATGAGTATCTTCAGCTTTCTTCAGCTGCTCTGTCACTGTTCTGTAGTTGGTTTGAATGAAGCGTAAACGGTCATGATGTTTGGCATAGGCTCTTCGCAGATCCTCATTCTCCTTAGTCTTAAGTGTGAGTAATTCCTGCAACCGCTGAACCTGCTCTTGACTGTCTGCCTCATCACTGTTGCCACCACCTGGAGATAGAGTCCTGGAGCCCTCACAGTGCCCCGCGGCTGCTGTGAAACTCTGCAGCTGTGCCTGGAGTTCTTGGATCTGCTGATCTCTCTGGCTGAGCTGCATGCTGAGGGCTGCTTCCCGCTGGCGGAGCTGTTCCTGGCTGTGCCAAAGGGCCTGGTATGACACGCTCAGCTCGCTGTAGAGCTTCTGGTAGGAGACAGTGTCTGCCGTGTGGGCCTCCTCTTGGCTGCGCAGGACTCTTTGCGTGTCCAGGTTAAGCCCCTCCAGCTGCTGAATAAGCTGGGCCTGTTCTCCTGCGTGTTCCACACTCTGCCTGTACAGACACTGCAAGTCCTGTAGCTCGCGCTTGATTTGACAGAGTTGCTGTTCTTTGTCAGCTCCTTCCCGTTCTACAGAGGAAAGCTGAAGGGACAAAGCAGTTGAGCGACTCTGAGCCTCTAGCACGTCCTGTCTGCTTCTGAATACTTCCTCTTCCAAACTCTTGACTCTGGAACTGCTGACGGCCTCTTGGTCCCGCAATCTCTCCAGCTCTGCCTGAGAGGCCGAATGCTGAGCATCTAATTGTTGCCTGGCTTCCTGCAGGGCACGCCTGCCCTCCTCCTCGCACTCCTGCGCCTGCCTCCTCGCTTCCTTAAGTTGTCGACTCTTATTCCCCAGTCTGTGCTGCAGAGCTGCCAGTTCTTTCTTCATTAGACCGCACTCCTCCTCACTGCCACGCAACCGCTGGACTTGGTTGTTTATCTCCTGCTCTTGTGCCGTCACTTTCTGCTCCAGCTCTTGGATTCTGTAGTCTTTTGCTTGAAGGATCTCCAGAACTTTCCTGTCCTTGTTCTCAGCTTTCTGCTTCTCTCTTTCCACTACAAGACTCACTGCCTGCGTGAGATCTGGACTGGCCACTTGAAGCCGCTTCCAAAGCGACCACACAAACTCCTTGTCTGCCTGGCATTGAGCGAGCTCCTCAGACAAACTAGTCACCTCTTCCTCAAGGAGCAAAACACGTTCATTATCTTTTGAGTCCATCGTGCTCCTGCAGCGCGTCCTTGGATACTGCTGAACTTACAGTTTATGTAAAGTGAAGATCTGCGATATTATTAAAACACCATTCGCATCGCATCTGACAGCATGTATTCATTATAAGGTTAAAACGGGGAAAGAGAAAACAGACCTCATTAAAGTGAAAATACTATCAAACGCCTGGACTGTTTCAAATGAACGCGCCAGTTCCGTGTTTTGACACAGAGCTGTTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476687 True 1489 lncRNA 0.51 12 11200215 11287017

Neighbor


gene id symbol gene type direction distance location
CI01000300_11141716_11143148 NA coding upstream 56620 11140851 ~ 11143595 (+)
CI01000300_11044621_11061213 NA coding upstream 138950 11044568 ~ 11061265 (+)
CI01000300_11036591_11037929 HEMGN coding upstream 162108 11034674 ~ 11038107 (+)
CI01000300_11005365_11024863 CORO2A coding upstream 173996 11005365 ~ 11026219 (+)
CI01000300_10969048_10992283 USO1 coding upstream 206989 10969048 ~ 10993226 (+)
CI01000300_11303493_11313969 NA coding downstream 16332 11303349 ~ 11314080 (+)
CI01000300_11323703_11358998 NA coding downstream 35436 11322453 ~ 11359248 (+)
CI01000300_11370829_11375624 NA coding downstream 83812 11370829 ~ 11375773 (+)
CI01000300_11444117_11455995 BNC2 coding downstream 157100 11444117 ~ 11456338 (+)
CI01000300_11478840_11479838 NA coding downstream 191766 11478783 ~ 11480053 (+)
G414909 NA non-coding upstream 51088 11079100 ~ 11149127 (+)
G414949 NA non-coding upstream 121693 11077919 ~ 11078522 (+)
G414948 NA non-coding upstream 124671 11075337 ~ 11075544 (+)
G414946 NA non-coding upstream 126349 11073637 ~ 11073866 (+)
G414904 NA non-coding upstream 167704 11030013 ~ 11032511 (+)
G415078 NA non-coding downstream 3391 11290408 ~ 11290643 (+)
G415080 NA non-coding downstream 182794 11469811 ~ 11473607 (+)
G415103 NA non-coding downstream 253937 11540954 ~ 11541281 (+)
G415108 NA non-coding downstream 265245 11552262 ~ 11552599 (+)
G415161 NA non-coding downstream 368046 11655063 ~ 11714698 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other upstream 536728 10661680 ~ 10674265 (+)
CI01000300_10604458_10604787 NA other upstream 595453 10604458 ~ 10605033 (+)
G414249 NA other upstream 826317 10369911 ~ 10373898 (+)
G413459 NA other upstream 2251612 8857687 ~ 8948603 (+)
G411777 NA other upstream 4730510 6469245 ~ 6469705 (+)
CI01000300_11704476_11708232 NA other downstream 416467 11704476 ~ 11708351 (+)

Expression



Co-expression Network