G415080


Basic Information

Item Value
gene id G415080
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 11469811 ~ 11473607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU476753
AGTCTTTTTAGTAGTGGTGTGAAGTGAAGCCAATATTTGTACCTGTATCTGTAACAATCTCAAAATTATTCATATTTATATTTGGATAAAATTGGAAGTGCGTAGACTGTTATGTCTATGGATTTAAATGTATATCTGTTTCCTTCATAGTTAGTATTGAGCAAATATGCCCTGTATAACTCAGAAAATAAGTATTTTTTATTATGATTGTAACATTTATTTAAATATATTCTAACTGTCAGAGCCTCGTAGGCAGTGTAGTTCAAGATGTAGTTTGGCTGTGCTTTGGGCGACCGAGTTTGAGTCATGGCTCAGGGACCTTTCTTGTTCCTGCAAAATAAATATTTAAATATCTTCTAATTAAAACAAAAATACTAAATGTTAAATAAAAAAATAAAAAAATAAATAAACTTTATTTTTTTTATTTTTTTGTTTTCGAGATTAACTTTGTGTACAGAGTTACAGTATGTCAGGAAAATCATCCACAACTTCAAATAAGAAGAGCAAATGTACTCTGATTAGAGAACATGGAAGTTGAAAATATTCAGTGGTTGAAAATTGCTAAAACAACTTTTACTATATGCATACAAATGCAAATCTGAACAGATTATAAAAAAATATGCCTATATAAATGCCGTCTCCGAGAGAGAGTGCGACAGAGAATATCATGTAGCCTATCAAATCATACAAGGCGTAAAAAATTTAAATAATAAAGAATAGAAAATGTGCATTATTCAGTGTCTTGAGTATTACTATTTTCTGAGAGACATGCAGAGATGGCAATGCAGCTATTTCACTTCACATGCAAATTATTGTTTAGAGATTTTAAGTAAAATTTCATGCTATCCCCATAGTTTACCTGTTATCCAGCAAACACAAGAAGTGACTGTGTCAGCCATATATATATATATATATATATTCAGCAGAAATATTCGTTATTCATTTTGAAGCCATTATCCGTGACTTTCTAAATAAGATATTCAGCATAAGGGACATCCGTATTTTTTTAGCCGAGAATGTAGTTGTTTAGACGTTTTCGGAGATGTGAGCTGCAGGCCGTCAGTGGCTGTTCATGACATATAATTTGTTTTGGGTATATCAAATGGGCAGTATTTAGTCTTATTAATCTGTTACTTATACCGGAGCAAATCGATTTGGCTGAGGGCAAAGTAACATTTCATAACTTCATATTTTTATTTAACTTAAATCCTGTACTAACTGGAGTGTTTATTTCCTATTGTACAAACTTCATACTTTCATAATAGCTATTTCATTTACATATTATTGTTCAATAATAATATTTTATTTAATATAAATATTATGCTGTATTTAGTTTTGAGAAAGGGTCTGTTAGTGATTGTGATTTTGACTTCAGTGAAAGTTATTAAGGCATTAGGCTTCATGAGTGAGTCAGTAGCAAAAACTTTTCTGTTGAAAGGGACTAAAACAATGTAGTAAACAAGGACATTATTTTTTACTTTAAACAACACCTTATAAGACTCAACCGACAAATGCAATGACTAGCATTGTCATGGGAAATCCCCTTAACTGTTAAAACGATACTTAATCAAAGATATCGCTTTCCTTAGTAGACATTCAACCTGATTTTTATTATGAATATAAGATTGGCCTAAAGATATCAAATGTGCCTTACCTGCTATATCAGATGCAGGTAAGACACTCGCTTAGTCTATCTCTCTCATAATACTTTACTCTACATAATATAAGCTTTAATGAAGAAACTCAGCATTCCTTAGTTACTAGTTCTAAAGTGATGTTTTAGAATTAGTAACGGAGGCTTGGGCTCATCTGTTAATCTGTCAACTTTTGATTTGCATCTGTGTATCTTGTCCAGATGTCTATCATTATCTAGTTGATACTACACGAGAGATGCAGCAAAAGCATAAAGCACAGTCTGGATGCTTACAGTTACTTTCTTAGAGGAAAGACTGGGAACATTTGTTTGTACAATGTGGATGACATTTGTCTTGTGTTTAGTGAAGCTGAAGCAAGTCAAATGGTGTCAAAAACGTCGCTAAGATGCCCAGGGAGATTATTAGTGGGCATTGCACTTGCATGGCTGGGTCAGTCTGTATATCTATGCAAATGATAAATGACATTGTTAACTGTATGCTAGAATACTAATTGTTATGTGCTATTATTACTTGTTTAATACATTTCAAAATGTGTGTGCTTAGGTTAGGTGACGTTTGTAGCCGTGTGTGTGAGAGGGTTTAAATGCTCCATCTGTGACATCTACACCCCTACGTGTGGTCACAAATAAACAGAAGGTACACGTGTCAGGCTGTGGCTGTATTAAAGTGCACGTCAATGGAAAATTTAACAAAAAAACAAAAAAAAACAAAAAACAAAAAACAAAAACAGTATTTAATCAAAAAATACAACAAGAAGAACACACAGGAGATCACAGGAGAAAGCTTAGCATAATAACCAAGTTTAACTTAGACAACACCGAACAAAGAACTGAATGAACTGAGAGCTTAAATACACATGGGAAGCTAATTAACAGAAACTGAAACAGGTGTGCAATTCAAATCAGTAACCATAGAAACAACTAGTGATGGTAAAATGAGATCAAAGGAAACAGGAACTAGAATTACACCAAAAGAGAACATACACATGACATTTCCTACCTGGACTAACAGGGCCTGTTTACACCTGGATTTAAAGACAGATTTAAATCTGATCGCTCAAACCACTTCAGGAGGTGTTCTGAGACACATTCCAATCAAAACTGAACAAGTATAAATGCATCTGGTTGTTAAAAACACATATGTAAATTTTACTATGTACGTGATGGCAGCCACAGAGCAACAGCACTGTTATAAATGCTATTCACTTACCAGAATCAAAATGCGTGCTGCATATCCTAGAGTTGCAAGTTGGTATCCAGCCTTCTTGCTCCACTGCTGCAATCCGGGCAAATTACTATTGGTTTAGTTACATAAGAGTTTACATATTTCATCAGTGTAACATATCTGCCAGTTGCCAAATGTAAAGCCTTAATGAATGGTTGTGAAACAAACCCGTTATCACAAATAAACCAGAGCAGAAGTGAATGTTCCTTGTCATTGTATCATATCAACAACTACCAATTAATTCTGCATGTTGATTTTGCACTCCTGACTGAAATTAATTAATTACTGTCACTGTAACCATTTTTTTTAATCACAAATAATATATAAATATATAGTGGTCAAGTGTTGAAAATAGAGTCCTAAATCTTTCTAATGATAGACAGTTTCTCAAGATTAAGTAAGAATGTCATGGTAAAATAGTGTGCAGTGAATGTAAACAATATTTTTCTGCCGGCCATATTTAAGTCCAAAAGTGCACATTTAGATAAATCATATTTCTTTAGACAGAATCATCATTTTTATTACAGTTTTTCTTGATTGCCAACACACAATCCACAATCCAAACAATTCACCATTTTCTCGCAATTGTAAACACAATCACAGAACTACACACCAACTTACAAAAGCAAATATTTTAGTTAAAAACATATTCTCTTTCGTCAGAATCAAACTTTGGCCTCACATGACACACAAAACCTAACAAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476753 True 3587 lncRNA 0.33 2 11469811 11473607

Neighbor

gene id symbol gene type direction distance location
CI01000300_11444117_11455995 BNC2 coding upstream 13473 11444117 ~ 11456338 (+)
CI01000300_11370829_11375624 NA coding upstream 94038 11370829 ~ 11375773 (+)
CI01000300_11323703_11358998 NA coding upstream 110563 11322453 ~ 11359248 (+)
CI01000300_11303493_11313969 NA coding upstream 155731 11303349 ~ 11314080 (+)
CI01000300_11141716_11143148 NA coding upstream 326216 11140851 ~ 11143595 (+)
CI01000300_11478840_11479838 NA coding downstream 5176 11478783 ~ 11480053 (+)
CI01000300_11500083_11519381 NA coding downstream 25216 11498823 ~ 11520162 (+)
CI01000300_11553769_11566330 NA coding downstream 79142 11552749 ~ 11566666 (+)
CI01000300_11704476_11708232 NA coding downstream 230869 11704476 ~ 11708351 (+)
CI01000300_11731136_11733070 NA coding downstream 257461 11731068 ~ 11734506 (+)
G415078 NA non-coding upstream 179168 11290408 ~ 11290643 (+)
G415028 NA non-coding upstream 182794 11200215 ~ 11287017 (+)
G414909 NA non-coding upstream 320684 11079100 ~ 11149127 (+)
G414949 NA non-coding upstream 391289 11077919 ~ 11078522 (+)
G414948 NA non-coding upstream 394267 11075337 ~ 11075544 (+)
G415103 NA non-coding downstream 67347 11540954 ~ 11541281 (+)
G415108 NA non-coding downstream 78655 11552262 ~ 11552599 (+)
G415161 NA non-coding downstream 181456 11655063 ~ 11714698 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other upstream 806324 10661680 ~ 10674265 (+)
CI01000300_10604458_10604787 NA other upstream 865049 10604458 ~ 10605033 (+)
G414249 NA other upstream 1095913 10369911 ~ 10373898 (+)
G413459 NA other upstream 2521208 8857687 ~ 8948603 (+)
G411777 NA other upstream 5000106 6469245 ~ 6469705 (+)

Expression


Co-expression Network