CI01000301_00614925_00640312 (PDCD11)


Basic Information

Item Value
gene id CI01000301_00614925_00640312
gene name PDCD11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 614654 ~ 640312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000301_00614925_00640312.mRNA
ATGGCATCTATGGAGGAAGATTTCCCCCGTGGCGGTGCAGAGAAGAAGACCACTGAGCCCAAACGTGTTAAAACACATGATGTGGACAATCTTTTTGAAAACCGTGAAACAGCGGTTAAAAAGAAGAAGAAGAGGAACGTGGAACAGGATGAAGAGGAAAAAACTAAAAAACTGAAAGTGGATGTAGAGAATTTAAAACTTAATTCTGCCACTACTGTGGAAATTCTTCATCTTCGGAATCTGAATATTGGCACTCTGATGCTGGGTTGCGTGAAGGAAGTGTCAGAGTTTGAGGTGGTAGTTGGTCTCCCAAGCGGTCTCGTTGGTTACCTGCCAATCTACAACATCTGTGACTCCTACACCAACATGCTTAATAACAGACTGGACTCTGAGGACAGTTTAGAGGCAGTTGTCCCTCTCTCAGAACTACTTACTCCTGGAATGCTGGTCAGATGTGTTGTGTCATCTTTAGACTCCGCTAAGGAGGGTAATGTTAGTCTTAAAGTGTCAATCAACCCAAAAGAGGTTAACAAGGTGTTGAGTTCCGGCACTTTGAAACCTGGAATGACACTGAGTGGTTGTGTGGAGAGTGTGGAAGATCACGGCTACCTGGTTGACATTGGAATCAGTGGCACTAAAGCTTTCCTGCCCAAAAAGAGCACAGCTTCAAAACAAGATCTGAATGTGGGTCAGTACATGTCGATCCTGATAGAGGAAGTCAAGAACGATGGACGTGTGGTCCGTCTGACCCAGAATCCCCAGGCTCTTGCAAAGGCCGTTGCAACGATTCAGCATGGATGGACTCTAGACGCAATCCTGCCCGGACTCCTGATCCGCGGACGCGTAAAGAGGGTTACTCCTCACGGGCTTATTGTGACGTATCTTTCATCTTTCACCGGAGTGGTTAATTTTCTGCACCTTGATGACGACAAGGCATCTACCTACAGCCAAGGACAAGAGGTCCTGGCACGGGTTCTGCATGTGGAGCCGTCCACGCGGCATGTGAGCCTGTCCCTGCGCAGCCATCTTCTGCCACCAGGGGGTGGTGTGCTGGATAAGTACTTCAGCGAGCGGCTGGGTGAGGTGGTGCAGGGCTGTAAGATGACAGATTTGCACTATCACTCAGGAGCCTTGATGAAGATGCCTGACGGTACCACAGCTTTTGTGCATAAAAACCTCATGAAGGAGCCAAATGAAGAGTTCAACCCAAACCGGAGCACTATTGAAACGACCCTCTTCAGATATCAAGACGTCAAAGTGGGACAAATTGTTGAGGGTAAAATTACGGGTTTGCAGCAACATGGCGTTAACGTGAGAATAACAGACCACATCAGAGGAATGATACCCAGAACTCACCTTGCCGATGTCGTCCTACATAACCCAGAGAAGAGGTTTTTTGAGGGTTTGAAAGTCAAGTGCAGGGTATTATCAGTGGATGCTCAGAACAAGAGGTTGATCCTGACCAAGAAAAAGGCCCTTGTTGAGTCCACACTCCCTCTCTTCCAGTCCTACTCTGATGCCAGGGTGGGCTGCATCTCTCACGGCTTCATCGTATGTGTGAAGAAGTTTGGCTGCATCGTTCGTTTCTACGAAGATGTGAAGGGTCTGGTTCCTGTAACGGAGCTGTCCACTGAGCTTGTGGATAATCCAGAAAGTCTCTTCTTCGTTGGCCAGGTTGTCCAGGCCAAAGTCTTGAATTGTGACCCGGAAAATAAGAAGCTATGTTTATCCTTCAAGGCCGTTTCTGAGGGAGATATAAAGGAGGCGCAAACTGAGAAATTTGACTTTGTGTCTGGAAAGACAGTCAGTGCAAGAGTATGCCGCAAAGTAGTGGATGGTCTGGAGGTCTCCATTGTTCCCGAGGAGGTGCCAGCTTTCATACCCACAATGCATCTCTCTGACCATGTGAGCAACTGCATTCCCCTGTGGACGGCGCTGGAGGAGGGCGACACCATCTCTAATATAATGTGTCTCAGCAAGACCAAGAAAAAGGGCATTACCCTCACCAAGAAACCCCTACTGAAGTTCTATATGGAGGACGACAACATCCCGCAGCAGTTCTCTGAGCTCCAGGTGGGGATGCAGATGATTGGCTGGGTGAAGAACATCATGCCTTATGGAGTCTTCGTCAGTTTCCCGCACGGACTCTTCGGCCTCGCTCCTAAAGATGCCATGGCTGACCAGTTCATCACAAACACATCAGGCATCTTTGAGATCGGCCAGACAGTTGTTGCCAAAGTGACCAATCTGGATGAAGAAAAACAAAGGTTTTTGGTCAGCCTGAAGGTGTCAGAATTGAGTCTCTTGGAGGAAGGAAGCCGTGCCAGATTGTTCCAGGGTCTGAAGGACAGGAAGGACATCTTTGAGATGGTTACTAGCAGAGGGGAGTCTGATGTCCTACAACAGCTCTCTGCTGTATCACTAGGAGATAAAATAAAGATGACAGTGGGTGATACCAGAGAGGATGGCTCGGTCACACTGAGCTCAGATCGGCTCAGTAAAGCCACTGTGTTGGCCTCAAAGTTCCACACAGAAGGTGTGAATGTGACTCCGGGCTGCAAACTCAGTGCAGTGATTCTCCATGTCGACCCTTTAAAGTCTGAGGTACATGTGTCGCTGCTTCCAAAGTTGATCAAGAAGAAGAAGCTGTTGACAAAGGACTCCAAACTCTCTGCAACAATCCAGTACACTGATAAAGACTTTGCTGTCATCTCATTGGGTGACACTGGTCACCTGACCTTCATTCCCCTTCGGGCTCACGTAAATAACATCTTGGATTCAAAGAAATGTTCAGTTGGTTCCTGTCTGAATGTGGTAGTGGAGGACCCGAGCAGCGAGGAATTAGGAGGACTTCCTCTTGTAGCATACCAGAACTCTAATGCCAAACACGATGAGACCAAATCCAAGAGCAGTGGTCGATCCAATGACTTGATTCTTGGGGAAGTGATGACAGTCACAGTAAAGAAGGTGAAGCCCACGAGCGTGCTGGTGGCGCTGCCGTCTGGGACCACAGGAAATATCCATGTGTCTGAGATAGAGGAGTCTCCCGCGGTTGGCAGCTTCCCAACAGCATCCCTGAAGATCGGGACAGAGGTCGAAGCCAGAGTGATTGGAGGGCACACAGTTCGTGGCAACAAGTTCCTGCCAATCTCTCACCCCAACTTTGGTGTTTCCCTCACTGAACTCAGTCTTCTGCCCAGAAAACTGAAAGATGCTGATGAGCAGTCAGTTGACACAATGAAAAAATACACACCTGGAGATGACGTCTTATGCTACCCATCAAAATACGACGAAAAAACACAAACCTTAGAAGTTCATGTGAAGCCCAATGTCATTGGAACCGTTGAGCTGTTAGCCATGATCACCAAACCTGGGCAAGCTAAACACCCAAAGAATCTTTTTAAACCAGGACAGACTGTTTCTGCAAAGGTTGTCAGTACTGGTTCCATCAAATCTTTTCAGCTTTCCCTGTCACTCACAGGGATGTACAAGCTGGAGCAAGGGTTGGTCACTATGGCGACGGTTTGGAAAGTTACGCCTTTTCTGGGACTGTTGCTCAAACTGCCATTTGGGAATTGGGGTTTTGCTTCGGTAATGGATGTCTCTGATGCATACGCAGACAACCCACTAGAGCCCTACAAACGGGGCCAACTAGTCCGGTGCTATATTACTGAGGAGACTAAAAATAAGAAATTCAAAGTTTCATTACGTCCCTCCAGATTGCATAAGGACCAGCATAAGAATGTTGCAGACCCAGAAATTCAGTCAATTTCTGATCTAAAAGAGGGCCAGATTATCAAAGGATATGTGAAATCTATAAATGATAAAGGCGTATTTGTGAGGTTATCAAGGGTCATCGCAGGAAGAGTCGAGTTCCAGCACGCTACAAAATACTTCATGGATGATCCAAAAGTTCTTTCCAAACACATTACCCTGAATGCACTGGTGACAGCCAAGGTTCTCAGTGTGAAGGCAGAGAACAGCCACGTGAACCTGTCTCTGCTGTCAGAGGACACTGGGAAACCAGATCTACTTCCAGAATCCCTTGATCTAAAACTGCGTCTGAAGGGAGAGAAGAAAGCGAAACATGACAAAATGGTCGCCAAGAGGAGACGAGCTCTTTCTGAGAGCAAACAACAAGAAAATGAGAAACATGAACCGAAGATAAAAAGGAAAAAAGTTGAAGCATGCCCAGTGAAGGGAGAATGCACAGGAGAGACGAAAACCTTAAAAGAGAAGAAGAAAAAGAAAACAAAAACAGAGGACAGTGACAGTGGTGTAGATGTGTTTTTCAGAGAGAAGGAAGAAACTACATCGAATAAAAAGTCTGACCAAGTAAAGGGTAAACATGAGAAAACGGAACCAAAACGGCTGCAGGTGACACTTGGCTTCCCATGGGAATCAACATTGTGCTCTTTAACACCTTTTGCCGCAGTAGACGACACCCATGAATCCAGTGAGGATGAGCAGGAAGTCAAGAGCAAGCCTGTGAAAAAGTCCCGTAAGGAGCTAAAGCAGGAGCAGCAGAATGCGGAGCAGCAGCTCAGCAAGTTGGAGGCTGAACTCATGGACACGTCTGTACGACCTGACAGCACAACGGCGTTTGAGCGTCTGCTCCTGTCGTCTCCGGACAGCTCCCTCCTCTGGCTGCAGTACATGGCTTTCCATCTGCAGGCCACGGAGATCGAGCAAGCGCGTGTGGTCGCCGAGAGAGCCCTTAAAACCATCTCATTCAGAGAGGAACAGGAGAAGCTGAATGTGTGGGTGGCCATGCTGAATCTGGAGAACATGTACGGGACACAAGAGAGTTTGCAGAAAATCTTTGAACGGGCCACCCAATACTGTGAACCTCTTCCTGTGTACCAGAAGTTAGCCGAAATTTATGCCAAGTCGGACAAGATCAAAGTGAGCATTATGTCTGATGTGAAAAGACACGAGCAAGCTGTATATCTGAGTTACGGCACCTTCCTACTACGACAGCGTCAGAGCGACGCTGCAAATGCCCTCCTACAGAGGGCGCTGCAGAGCCTGTCCAATAAAGAACATGTGGACCTGATCGCCAAATTTGCCCGGTTGGAGTTTCAGTACGGGAATACTGAGAGAGCCAAATCCATGTTTGACAAGGTCCTGAGCACCTACCCCAAACGCACAGACCTGTGGTCAGTCTTCATAGACCTGTTGGTGAAGCACGGCTCTCAGAAGGAAGTGAGGGAGATTTTTGACCGTGTGATTCACCTAAGTGTGTCGGTAAAGAAGATCAAGTTCTTCTTCAAGCGTTACCTGGAGTACGAGAAGACGAACGGCACACCTGAGACCATCCAGGCGGTCAAACAGAAAGCTATAGAGTATGTGGAGTCGAAAGGAGCAGAAGCCGCCAGCTAGAACCACCTATTTTGCATTTGCATCAGTATTTGAGGACAAAGAATCTTTTCTTCCTCCCATTTTTTTCATTCCTCGGCTTCATTTTTTCCTATTGACACATTTCTGGAGGTGTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTAAATTTGCATCTTCTGTCATATCATTGAATGTCTATAAATAGCCACTTTTTCTTCTTCGATTAAACGATGATTATGGATTTAAAAAATATTGTTGTAACAAAGGAATTCAAGTTTTGCAATAAA

Function

symbol description
pdcd11 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing and rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000301_00614925_00640312.mRNA True 5653 mRNA 0.47 35 614654 640312

Neighbor

gene id symbol gene type direction distance location
CI01000301_00598019_00599989 NA coding downstream 14665 597987 ~ 599989 (-)
CI01000301_00559220_00559781 PPM1K coding downstream 54193 558843 ~ 560461 (-)
CI01000301_00540389_00552028 NA coding downstream 62626 540334 ~ 552028 (-)
CI01000301_00499534_00519353 PAPSS1 coding downstream 95297 498146 ~ 519357 (-)
CI01000301_00448491_00464517 DKK2.L, DKK2 coding downstream 149811 448230 ~ 464843 (-)
CI01000301_00643063_00650841 TAF5 coding upstream 2168 642480 ~ 651621 (-)
CI01000301_00687025_00688716 MSX1B coding upstream 46232 686544 ~ 689228 (-)
CI01000301_00723145_00732453 CALY coding upstream 81879 722191 ~ 732453 (-)
CI01000301_00759695_00763509 NA coding upstream 118827 759139 ~ 763908 (-)
CI01000301_00851555_00904753 FAM13A coding upstream 211093 851405 ~ 904753 (-)
G416378 NA non-coding downstream 24094 582833 ~ 590560 (-)
G416374 NA non-coding downstream 41440 533995 ~ 573214 (-)
G416390 NA non-coding downstream 82226 521254 ~ 532428 (-)
G416423 NA non-coding downstream 93780 520389 ~ 520874 (-)
G416337 NA non-coding downstream 202384 399897 ~ 412270 (-)
G416373 NA non-coding upstream 155847 796159 ~ 819078 (-)
G416376 NA non-coding upstream 159827 800139 ~ 817745 (-)
G416511 NA non-coding upstream 271423 911735 ~ 912460 (-)
G416571 NA non-coding upstream 350724 991036 ~ 991309 (-)
G416375 NA other upstream 179436 819748 ~ 831202 (-)
G416547 NA other upstream 412806 1053118 ~ 1054771 (-)
CI01000301_01082494_01085192 NA other upstream 441665 1081712 ~ 1085573 (-)
CI01000301_01756221_01772903 NA other upstream 1132008 1755937 ~ 1772971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location