CI01000301_00643063_00650841 (TAF5)


Basic Information

Item Value
gene id CI01000301_00643063_00650841
gene name TAF5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 642480 ~ 651621 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000301_00643063_00650841.mRNA
AGGGACCACGTGGTGACGTGATTTCGTCATGATGTAAAAGAATCCCTGAATTCGTTCTTGGACATGAACTGTTCAAAAGAACCGATTCGCGGAAATGAGGAAATGAGGCTTAACTTCCCATCACTACCTCCTAGTGGAAAGTAAAGGATAGCGCAGTACTCCTCATCTGCTGCTACATTACTGCCCCTATCGTCGCTCTGGAAAATAGTACGTGTTTTACGTAAATACTCTATTTCAAACATAAAGCTCTCGGCTGAACGACGTAACTATACGCCAGCTTCGAGCGGCGCGCTCTCGGCTGAACGACGTAACTATACGCCAGCTTCGAGCGGCGCGCCAAGAATTGAAATGACATTAGAAAATGGGTGGAGAATCCGCAAAAAAAAGAGAAAAAGATTGAGTGTGATAATTCAGGACAAAAAAAAATCATTTCAAAAATTTTGTGTATTCATCATTTACTATACACTGAATACAGTTGGTATTAAACTGAAAAATTCTTACTTAAACGCGTATTTCATGAGGTACCACCCATTTTTAAAACCAAATTTGTTTTGTTATGATACTTGTGCATTGTTTACAACTACTTTTGTATTTCATTCCAGCAAGAATTGTCAAAAGTATTTGACGTACAAAGTAAAAATACCTCAAACAGACAGTTCGGGCGGTCAAATATTGCCGCTTTATTAAAAAAGAAATTTTTTTATGTCTCACAGTGGTTCCTGATATTTATCAAATCATTTATAACAAATTCTGCTCCGCAAGACAACTTAACAAAACGCCATGCGCGTATGTCATGACGCTGTATGCGTCGTGACGTCATCGCATTCAGCGCCGGGGAAAATGGCGGCTGTGCAAGATGGACCGATGGATCTGGACGCAGAGAAAGAGACAAAGCCAGAAATACTTAGCGATGGGACGTCAAACCTCTCGGGGAACACTGGGAGCGGGGCGCTCTCCTCATCTCCCCTCACCGCTGCCCCCGCCGGCGGAGCCCCGAAGCTGGAGGACCAACAAACTTTGATCGCAGTGTTGCAGTTCTTAAAGCGGAATAAACTGTCAGAGTCGGTGGATATTCTGAGGCGGGAAGCCGGTCTTGCAGAAGACCTGGAGGACCCGCAGGCTGCTGATGGCAGCGGAGGGAAGGATGACGGAGATGGAGGGGATGCAACCTCTCTGCTCAGCCGGGTGTCTATCGCAGCAGCAGCCGCCCCCCAGAGCACGCTGACTCCTATGCCAGTAAAGAGCGCAGAAGACCAGCCGGATGTTCGTGTGGTGCTGTCAGCATACAGCCAGCAGGGGGACCCCTCTCTATATCAGGTATATTACAGCGACCTGAAGAACTTCATAGAGTCAGTGCTGGACTGCCACCGAGCGGAGCTGTCCCAGCTCTTCTACCCTCTGTTCGTTCACATGTACCTGGAGCTGGTCTACAACAACCATGAGAACGAAGCCAAGGCTTTCTTTGAGAAGTTCAGCGGTGATCAGGAGTGTTACTATCTGGATGACCTGCGTGTTCTCTGTGGCCTCACTAAGAAAGAGCACATGAAGGGGAACGAGGCCCTGCTGGATTTCCGCACCAGCCGTTTTGTGTTGCGCATCTCCAGAGACTCGTACCAGCTGTTGAAGAGACACTTGCAGGAGAGACATAATAACCAGATATGGAACATCATTCAAGAGCACTTGTACATCGACATCTTTGACGGCATGCCCCGCAGTAAGGGTCAGATCGACAGCATGTCCGGCAGTCTTGCGGGAGAGGCCAAACGAGAAGTCAATAAAGCCAAGCTGAAGGACTCGGACAAACTGGATAAGATCATGTACATGAAGGAGAGCACCAAAAGAATCCGGCTGAGCCCGGAGAACCTGCCTTCTATTTGCTTCTATACGTTCCTCAATGCCTACCAGGGTTTGACGGCGGTAGACTTCACTGACGACTCCAGTCTGTTAGCGGGAGGATTTGCAGACTCCACGGTTCGCGTGTGGAGCGTCACACCCAAAAAATTACGCAAAGTCAAATCTGCAGCAGACCTGAATCTGATTGATAAAGAGTCTGATGACGTTCTGGAGAGGATTATGGATGAGAAGACAGCCAGTGAGTCTAAAATCCTACACGGTCACAGCGGGCCGGTGTATGGTGTCAGCTTCAGTCCAGACAGGAACTATCTGTTGTCTAGTTCTGAGGACGGCACAGTCAGACTGTGGAGCCTTCAGACGTTTACATGTCTTGTGGGGTATAAAGGACACAACTATCCAGTGTGGGACACTCAGTTCTCACCGTTCGGCTATTACTTTGTGTCTGGAGGTCACGACAGAGTGGCACGGCTCTGGGCGACGGACCATTACCAGCCATTACGGATATTTGCTGGGCATCTGGCTGACGTCACATGCACGCGATTCCACCCCAACTCGAACTATGTGGCCACAGGCTCGACCGACCGCACTATACGCCTCTGGGATGTCCTGAATGGAAACTGTGTCCGCATTTTTACAGGTCACAAGGGGCCCATCCATTGTCTTGCATTCTCACCTAATGGAAAGTTCCTGGCATCTGGATCCACAGACGGGAGAGTTTTACTATGGGATATTGGACATGGGCTGATGATCGGAGAACTGAAGGGCCACACAGACACAATTTATGCCCTCAAGTTCAGCAGAGACGGAGAAATCCTTGCATCAGTTCGGCTGTGGGACTCCATGAAGGCTTTCGATGAGGTGGAGACGGACGACTTCACGGCAGCAACGGGCCACATCCACTTGCCTGATAACTCTCAGGAGCTGCTGCTGGGGACGTACCATAGCAAATCCACACCCGTCACCCACCTGCACTTCACCAGACGCAACCTGCTACTGGCTGCAGGAGCCTACAACTCCCAATGAAGTGACCACATGTTTCGGAGGACAATGACTTTATGTAGCCGTGTGTTTTTCATGAATGGTGCATATTATTTAAAGATTACCGCTCACCCGAACATGTGAAATAGGTTCAAGCGAAGTGAAAGACCTTATCAAGCACTGAGCATACCTGGGAGCAGCGACCAATACCTCTTTCGTCATTCACATGCTGATCCTAGATCTTACACCCAATCCTGCTCCCGGAGGGCCACTGTCCTGCAGAGTTCAGCTCCAACCCCAATTAAACACACCTGAACCTAACTAGGTCTTACTAGGCATACTAGAAACTTCCAGGCAGATGTGTTGAGGCTAAACTCTGCAGGTCAGTGGCCCTTCAGGACCACGTTTGGACACCCCTGTCTTACACCTTATGCTCTTAAGCTTACTTTTTCTCTTCCATGCTTGTTTTCAAGGCCCTTATGCATCAAATGTTTCAAAATGACATGGCTGATCTCATTTAAACTTTTCCAATTCAGAAACTGCTCCTTGATCTTTGCAAAGTGCTGTATATGAGCTCTGCTCTCAATTTATGTACAAGCTTTTATACGAGTGCCTCATTGTAAATAAA

Function

symbol description
taf5 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).

GO: NA

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000301_00643063_00650841.mRNA True 3460 mRNA 0.48 10 642480 651621

Neighbor

gene id symbol gene type direction distance location
CI01000301_00614925_00640312 PDCD11 coding downstream 2168 614654 ~ 640312 (-)
CI01000301_00598019_00599989 NA coding downstream 42491 597987 ~ 599989 (-)
CI01000301_00559220_00559781 PPM1K coding downstream 82019 558843 ~ 560461 (-)
CI01000301_00540389_00552028 NA coding downstream 90452 540334 ~ 552028 (-)
CI01000301_00499534_00519353 PAPSS1 coding downstream 123123 498146 ~ 519357 (-)
CI01000301_00687025_00688716 MSX1B coding upstream 34923 686544 ~ 689228 (-)
CI01000301_00723145_00732453 CALY coding upstream 70570 722191 ~ 732453 (-)
CI01000301_00759695_00763509 NA coding upstream 107518 759139 ~ 763908 (-)
CI01000301_00851555_00904753 FAM13A coding upstream 199784 851405 ~ 904753 (-)
CI01000301_00910345_00934727 NA coding upstream 258521 910142 ~ 934794 (-)
G416378 NA non-coding downstream 51920 582833 ~ 590560 (-)
G416374 NA non-coding downstream 69266 533995 ~ 573214 (-)
G416390 NA non-coding downstream 110052 521254 ~ 532428 (-)
G416423 NA non-coding downstream 121606 520389 ~ 520874 (-)
G416337 NA non-coding downstream 230210 399897 ~ 412270 (-)
G416373 NA non-coding upstream 144538 796159 ~ 819078 (-)
G416376 NA non-coding upstream 148518 800139 ~ 817745 (-)
G416511 NA non-coding upstream 260114 911735 ~ 912460 (-)
G416571 NA non-coding upstream 339415 991036 ~ 991309 (-)
G416375 NA other upstream 168127 819748 ~ 831202 (-)
G416547 NA other upstream 401497 1053118 ~ 1054771 (-)
CI01000301_01082494_01085192 NA other upstream 430356 1081712 ~ 1085573 (-)
CI01000301_01756221_01772903 NA other upstream 1120699 1755937 ~ 1772971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000619 taf5 coding NC_007112.7 CM002885.2 49415281 ~ 49432147 (+)
bowfin (Amia calva) AMCG00003326 LOC106564630,LOC106588642 coding CM030139.1 CM030139.1 19656665 ~ 19661649 (-)