G416337


Basic Information

Item Value
gene id G416337
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 399897 ~ 412270 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU478177
AAGAATAGTATTCAAAGACTTTATTGTTCTCAAATGTGTCCCTTCATTCAACATAGTTAGAGAGGTCTAGAGGTTAGAAAATAAGCCTTCTCACAGAAGTTTCTATTTGATACCGCTGTTACTCATTGTCTGAGCTTTGCAGACTCCTTTGCCAGCAACCTCAAAAGCAGCTCCCTTGTAAGTGGCCACACATTGGTCATTGGTGCGCAAGTCTGGCTGGACCTGCTCCCACACTTTCTTCTTTGGGTTCAGCTCCTTGTCAGGCTCACCTGGGAAGCCCTGGACGGAAACCCTGTCTCCAGCCACGGCTCCACTCGGGGGATCCAGGATTTCAACTTTCTCTGGAGAGCTGGCACACATGACCATGGCCTGGGACAACACGCCTCTCATCTTAGCAGGCTTCAGGTTGCATAGCAGCACAGCCATACGATTCTGCATCTGCTCCAGGGGGATGTGTTTGACCAGGCCACTGACGACAGTACGTGGAGCCGCTTCGCCCACATCCACCTGCTCAACGTAGAGAGAGTCGGCGTCAGGGTGCTTCTCTGCGCTGATAATGCAGCCCACTCGCAAATCCAGTCGAGACACGTCTACTTTCGCCTCTTCCTGAGGCGGCGCCGCTGGTTTCTTCTCAGTATGCTTACCCTTCTTCTCAGCTTTCATCTTTTTCGTGTCATCATTGTTTTTGGCTGGTGGGGTTTTTGTGGCAGGAGCAGAAGGGGCTGCTGGGGCAGGTGGTTCTGCGGCTGTCGGTTTAGAGACACACTGGATGCTGGGCTCCTCTGAAGGCATAGCCACCTCTTTCACTGCGAAGAACAGTTATTTTACTTCTTTATCATCAGAAAAACAATGTTTTGTTAATCCCAAATACCACAAGATGAAGGTTTATGTTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU478177 True 895 lncRNA 0.50 4 399897 412270

Neighbor

gene id symbol gene type direction distance location
CI01000301_00344929_00381428 TBCK coding downstream 18469 344929 ~ 381428 (-)
CI01000301_00205916_00210613 SGMS2 coding downstream 188337 205322 ~ 211560 (-)
CI01000301_00196881_00204784 CYP2U1 coding downstream 194515 196881 ~ 205382 (-)
CI01000301_00188877_00193996 HADH coding downstream 205901 188171 ~ 193996 (-)
CI01000301_00010762_00033627 SLKB, SLK coding downstream 365367 10755 ~ 34530 (-)
CI01000301_00448491_00464517 DKK2.L, DKK2 coding upstream 35960 448230 ~ 464843 (-)
CI01000301_00499534_00519353 PAPSS1 coding upstream 85876 498146 ~ 519357 (-)
CI01000301_00540389_00552028 NA coding upstream 128064 540334 ~ 552028 (-)
CI01000301_00559220_00559781 PPM1K coding upstream 146573 558843 ~ 560461 (-)
CI01000301_00598019_00599989 NA coding upstream 185717 597987 ~ 599989 (-)
G415781 NA non-coding downstream 333118 66430 ~ 66779 (-)
G415780 NA non-coding downstream 334404 65200 ~ 65493 (-)
G415777 NA non-coding downstream 347230 52310 ~ 52667 (-)
G415775 NA non-coding downstream 351851 46371 ~ 48046 (-)
G415774 NA non-coding downstream 353541 46104 ~ 46356 (-)
G416423 NA non-coding upstream 108119 520389 ~ 520874 (-)
G416390 NA non-coding upstream 108984 521254 ~ 532428 (-)
G416374 NA non-coding upstream 121725 533995 ~ 573214 (-)
G416378 NA non-coding upstream 170563 582833 ~ 590560 (-)
G416373 NA non-coding upstream 383889 796159 ~ 819078 (-)
G416375 NA other upstream 407478 819748 ~ 831202 (-)
G416547 NA other upstream 640848 1053118 ~ 1054771 (-)
CI01000301_01082494_01085192 NA other upstream 669707 1081712 ~ 1085573 (-)
CI01000301_01756221_01772903 NA other upstream 1360050 1755937 ~ 1772971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000631 aimp1a coding NC_007112.7 CM002885.2 50293938 ~ 50319654 (+)
bowfin (Amia calva) AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding CM030131.1 CM030131.1 29031879 ~ 29049397 (-)