G416539


Basic Information

Item Value
gene id G416539
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 1019364 ~ 1022667 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU478435
TCCATTTTCCACATGTACTTTTATTGTTGTATGACAGATGATCATCATTTTGGTCAGGACAACCATGTGCGTAACGGTTATAATTGGAAAGGTTCTCCTTCAGGTGTTGCCCCGGACACTCCAAGCAGAGTAAGTTACATTGCAAACGTTTCTTGAGAAGTTACACACGCACACACGCATACGTTAAGATACATGAATATCCACACACACACACACACACACACACACACACACACACACGGTCAGCTGTGAATTCTACAGTCGGGGATTTGGGGCCTTTGAAGGGTCTAACTGCTGCGGTGTTGTCGTGGAGTCGAGTCACGCTCCAAGGAAGGTGACTGCCGTGTCTCTCTCCTCTACCAGCTCAGCGGAGGTGGCGTCCATCTTAGCGCGGGAGAAATCGTTGATGGAGAGTCCGTCAACCACCTTCCAGGTCTTGTTCTGTTGGGGTCGACATACAGAAACACATGGAAATGATCAGTACTTACATAAGCCTTCTAAACCTTGTATTTCTAAACTACTACTTAATGCTTTGATTTCATTTCTTTATTATTTAAAGTGCCCCTATTATGCTATTTCTAAAGATCCTAATGTTGTTTTGGAAGTCTTCTACAATAGGTTTACATGCATCCAAGGTCAAATAACACTTTAATTTTCTCATAATATACACTGCAGCATCACCTCTTTTCTCAGTGTCTGAAATGATTCAGTAAAGATTCGGTCTCTTTAAACCCCTCCTTTCTGAGAACCTGCTCTGCTCTGATTGGTCAGATGGCCCAGTCTGTTGTGATTGGTCTACCACTTACAGCGCGTGTCAGAAACGAAAGGCTCATTACCATATCTGAATTTCAGCATTGGATCTTCCTCAGCGCTTGATACACGGTGATACGAACAGTAACAATGGTCAGTTTTACCGTTTCAATTCAAGGTTGAGTCCTTACCCTGTAAAGTAGATTTGCTTTTGCAACGCAGAAAACAGTGTCTTCTCGACATGTTGACAACATGAACCAAACTTATCTTAGCTACAACTAGTGTTTGAGGGTCAAAGTAGACATTGTTCGAGGGCAGCCAATGAAGAGCATAGGCTGGCCTTTTGCAAATTTGTTCAAAACCTACGCAGGTTCACACAGGAAGTAAGAGTAGAATTACTGACGACTTGTCCATTTACCGTGCGCTTTGATCTTTGAAACTTTACAGACCTTTCACATTCACAAACAGCTATATTACAGACTGCATGAAAGGTAATATCCAAAAAAGCATAATATGAGCACTTTAATTTTACTGTTTTTTTTTTTTTTAGGAATTTAAAACTTTCAGTGACGAAGACAAACCTTAATCTTAACAGGGAAGGAGTACATGAGATCATCAGGAACTCCATAGGAATTACCAGAGGAGTAGACGCCCATAGACACCCACTCGCCATCAGGAGTGCCGAACCAGATGTCCCTCATGTGGTCACAGATGGCTTTGGCAGCAGACATTGCGCTGGAGAGCTTCCTGGCCTTGATGACAGCTGCACCTCTCTGCTGCACCGTGGAGATGAAGTCGCCCTTCAGCCAGCTTTCATCATTCACGGCGTCAAAGGCTGCCAACTCCTTCCCATGGTGGTTCACGATAGCGTGGTGCACATCTGGGTACTGAGTTGAGGAGTGATTTCCCCAGATAATCACATTCTTCACATTGTCAGAGGACACACCAACACGCATCGCCACCTGAGAGCGGGCCCTGTTATGGTCCAGACGGGTCAGGCAGGAGAAGTTCTCCTTAGGAATGGACGGAGCAGATTTGGAGGCGATCAAACAGTTGGTATTGGCTGGATTCCCGACAACTAGCACCTATGCAAAGAAAAGAAAAAGTAAACGGCAGAACAGCAAACACCAAAAACTGACATTTACCTTGACAGTCTTCTTGGCGTACTTCTCCAGTGCTTCACCTTGGGTTTTAAAAATGGCCACGTTGGCCTTCAGAAGGTCCTTTCTCTCCATGCCCTCTTTCCTTGGCATAGAGCCCACCAAGATGGCAGCATCAAGGTCCTTGAAGCCCACCTCAACCTTATCAGTAGGAATCACATCTGTGAGGAAAGAGAAACAAAAGGACACATTTAGGTCAA
>TU478434
TCCATTTTCCACATGTACTTTTATTGTTGTATGACAGATGATCATCATTTTGGTCAGGACAACCATGTGCGTAACGGTTATAATTGGAAAGGTTCTCCTTCAGGTGTTGCCCCGGACACTCCAAGCAGAGTAAGTTACATTGCAAACGTTTCTTGAGAAGTTACACACGCACACACGCATACGTTAAGATACATGAATATCCACACACACACACACACACACACACACACACACACACACGGTCAGCTGTGAATTCTACAGTCGGGGATTTGGGGCCTTTGAAGGGTCTAACTGCTGCGGTGTTGTCGTGGAGTCGAGTCACGCTCCAAGGAAGGTGACTGCCGTGTCTCTCTCCTCTACCAGCTCAGCGGAGGTGGCGTCCATCTTAGCGCGGGAGAAATCGTTGATGGAGAGTCCGTCAACCACCTTCCAGGTCTTGTTCTGTTGGGGTCGACATACAGAAACACATGGAAATGATCAGTACTTACATAAGCCTTCTAAACCTTGTATTTCTAAACTACTACTTAATGCTTTGATTTCATTTCTTTATTATTTAAAGTGCCCCTATTATGCTATTTCTAAAGATCCTAATGTTGTTTTGGAAGTCTTCTACAATAGGTTTACATGCATCCAAGGTCAAATAACACTTTAATTTTCTCATAATATACACTGCAGCATCACCTCTTTTCTCAGTGTCTGAAATGATTCAGTAAAGATTCGGTCTCTTTAAACCCCTCCTTTCTGAGAACCTGCTCTGCTCTGATTGGTCAGATGGCCCAGTCTGTTGTGATTGGTCTACCACTTACAGCGCGTGTCAGAAACGAAAGGCTCATTACCATATCTGAATTTCAGCATTGGATCTTCCTCAGCGCTTGATACACGGTGATACGAACAGTAACAATGGTCAGTTTTACCGTTTCAATTCAAGGTTGAGTCCTTACCCTGTAAAGTAGATTTGCTTTTGCAACGCAGAAAACAGTGTCTTCTCGACATGTTGACAACATGAACCAAACTTATCTTAGCTACAACTAGTGTTTGAGGGTCAAAGTAGACATTGTTCGAGGGCAGCCAATGAAGAGCATAGGCTGGCCTTTTGCAAATTTGTTCAAAACCTACGCAGGTTCACACAGGAAGTAAGAGTAGAATTACTGACGACTTGTCCATTTACCGTGCGCTTTGATCTTTGAAACTTTACAGACCTTTCACATTCACAAACAGCTATATTACAGACTGCATGAAAGGTAATATCCAAAAAAGCATAATATGAGCACTTTAATTTTACTGTTTTTTTTTTTTTTAGGAATTTAAAACTTTCAGTGACGAAGACAAACCTTAATCTTAACAGGGAAGGAGTACATGAGATCATCAGGAACTCCATAGGAATTACCAGAGGAGTAGACGCCCATAGACACCCACTCGATCAGGAGTGCCGAACCAGATGTCCCTCATGTGGTCACAGATGGCTTTGGCAGCAGACATTGCGCTGGAGAGCTTCCTGGCCTTGATGACAGCTGCACCTCTCTGCTGCACCGTCTGCCGTAAAGAAATGAAAAGATTTACAGATGGGTAAATTAAAGCAGTAAAATACAAGAGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478435 False 2110 lncRNA 0.45 5 1019364 1022667
TU478434 True 1597 lncRNA 0.42 2 1020956 1022667

Neighbor

gene id symbol gene type direction distance location
CI01000301_00985983_00986183 NA coding downstream 32727 985697 ~ 986637 (-)
CI01000301_00981124_00984214 NA coding downstream 34752 980822 ~ 984612 (-)
CI01000301_00942218_00944206 NA coding downstream 74946 941648 ~ 944418 (-)
CI01000301_00910345_00934727 NA coding downstream 84570 910142 ~ 934794 (-)
CI01000301_00851555_00904753 FAM13A coding downstream 114611 851405 ~ 904753 (-)
CI01000301_01040203_01048045 SPAST coding upstream 17459 1040126 ~ 1048045 (-)
CI01000301_01061298_01069683 PSEN2 coding upstream 38178 1060845 ~ 1069683 (-)
CI01000301_01082494_01085192 NA coding upstream 59259 1081712 ~ 1085573 (-)
CI01000301_01108934_01140005 JAG1A coding upstream 85405 1108072 ~ 1140031 (-)
CI01000301_01178856_01184335 ESF1 coding upstream 156189 1178856 ~ 1184335 (-)
G416575 NA non-coding downstream 4977 1013190 ~ 1014387 (-)
G416571 NA non-coding downstream 28055 991036 ~ 991309 (-)
G416511 NA non-coding downstream 106904 911735 ~ 912460 (-)
G416373 NA non-coding downstream 200286 796159 ~ 819078 (-)
G416538 NA non-coding upstream 12635 1035302 ~ 1038330 (-)
G416550 NA non-coding upstream 32669 1055336 ~ 1058838 (-)
G416580 NA non-coding upstream 69300 1091967 ~ 1102144 (-)
G416546 NA non-coding upstream 150935 1173602 ~ 1176386 (-)
G416375 NA other downstream 188162 819748 ~ 831202 (-)
G416547 NA other upstream 30451 1053118 ~ 1054771 (-)
CI01000301_01756221_01772903 NA other upstream 749653 1755937 ~ 1772971 (-)

Expression


Co-expression Network