G416538


Basic Information

Item Value
gene id G416538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000301
NCBI id null
chromosome length 1891408
location 1035302 ~ 1038330 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU478431
CTGCGTTAAATATGTTTAATGCGTTAAAATGGGGAAAAAAATAATCGCATGCGTTAACACGTTAATTTTGACAGCATAATTATGCATTTACAGTCATTTGAGCAATTTTCTACACTCCAAAATCAACATTTTGAAGATCTAAAACATTTTAATTTCTGCTGTAAAGTGTAAACATCCGTTTTTAAAGGGACGTCTACTGCTTTCATCCTCTGCCACTTCTGATATTAATCTTTTACTGAGTGAGCTACATAGTAGCAAACCAGTCTTGTTAAAACTGAATATACAGCCCTTTTTGAAATTCACTGTGAAAAGCATTGACAGGAAATGGTTTTCTTATGGGCATTTAATACTGATAATATGGACGGCTTTTGATGGTCACACTCAAATCTGACACACATTTCCACACATACACATATAAATGTCCAGGTGACATGTTGGACAGCTGATGTGGTTGTAAAGGCCTCAGTGGTCCAGGATGCGCAGGTTTCCTGAAACGATCTTGTTCTCTAGCATCGCTCCAGCCGGGATGTCAATTCTGTCTCCAACCTTGGTGAAGGAGCTGCCCAGTTTGACATGAGGTGTTGAGGGGAACTCTCTCTTGGGGCTCATGGTCAGAGATCCCGCATCCATGCTGTACAAGTTGGACATGACCAGCAGGAGGTCAGAGGTAGTTTTGACGGGCAGGAAGCGGCTACGGGGCACGTTGATGCCAAGCGCGTTTTCGAAGCTCTTCATGGCAGAGCCCACAGCCGTCTCCAACTGAATGACATTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU478431 True 774 lncRNA 0.43 2 1035302 1038330

Neighbor

gene id symbol gene type direction distance location
CI01000301_00985983_00986183 NA coding downstream 48665 985697 ~ 986637 (-)
CI01000301_00981124_00984214 NA coding downstream 50690 980822 ~ 984612 (-)
CI01000301_00942218_00944206 NA coding downstream 90884 941648 ~ 944418 (-)
CI01000301_00910345_00934727 NA coding downstream 100508 910142 ~ 934794 (-)
CI01000301_00851555_00904753 FAM13A coding downstream 130549 851405 ~ 904753 (-)
CI01000301_01040203_01048045 SPAST coding upstream 1796 1040126 ~ 1048045 (-)
CI01000301_01061298_01069683 PSEN2 coding upstream 22515 1060845 ~ 1069683 (-)
CI01000301_01082494_01085192 NA coding upstream 43596 1081712 ~ 1085573 (-)
CI01000301_01108934_01140005 JAG1A coding upstream 69742 1108072 ~ 1140031 (-)
CI01000301_01178856_01184335 ESF1 coding upstream 140526 1178856 ~ 1184335 (-)
G416539 NA non-coding downstream 12635 1019364 ~ 1022667 (-)
G416575 NA non-coding downstream 20915 1013190 ~ 1014387 (-)
G416571 NA non-coding downstream 43993 991036 ~ 991309 (-)
G416511 NA non-coding downstream 122842 911735 ~ 912460 (-)
G416550 NA non-coding upstream 17006 1055336 ~ 1058838 (-)
G416580 NA non-coding upstream 53637 1091967 ~ 1102144 (-)
G416546 NA non-coding upstream 135272 1173602 ~ 1176386 (-)
G416594 NA non-coding upstream 138483 1176813 ~ 1177032 (-)
G416375 NA other downstream 204100 819748 ~ 831202 (-)
G416547 NA other upstream 14788 1053118 ~ 1054771 (-)
CI01000301_01756221_01772903 NA other upstream 733990 1755937 ~ 1772971 (-)

Expression


Co-expression Network