CI01000304_00292894_00306187 (PHAX)


Basic Information

Item Value
gene id CI01000304_00292894_00306187
gene name PHAX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 292894 ~ 306479 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00292894_00306187.mRNA
ATGGCGGGTGACAGAGACAGAATGGCGGATCTTGAGGATGGAGAACTAGAGTCTGATCATGAGTCTGATATGCGGGATGCTGCAGCGGAGCGAGTGCAGAGTAGAGGACCCTCTTTGAGCGCCGCATCCATCACAGGATACCGCAACTGCAAGAACACAGACTCCAGTGACAGCAACTCTGACTCTGAAGATGAGGCCATGCTGTGGAGACACAAACGGCTCAAGTGTTCCAGTATTCCAGCTCCTGTCCATGCCAGGGCTGCAGCGGGCCCCTTCGCTCGCAAGGTCAACAACATCTGGGGCTCTGTGGTGCAGGAGCAAAGTCAGGAAGCTGTCGCAGCAGAGCTGGGCATCTTGGGAATGGAAGGGGGCGTCAGCATGAGCAGTCGGCAGAGTGAGACCTATAATTATGTCCTGGCCCGCAAGATGATGGAAAAAGAGCGTGGAGAGGTGGAAGAGGGATCGAAGAGCATGTTGGATGGTGAGCTGGAGGGATACATGCAGAGAGGACAAGCCCAGACAGATAAGAGCTGTCAAAAGAGAAAGCGTCCGGCCAAGGAGAGACTGGGCCCGCGGGCTGAGATGGACTTGAAGGGTCGATATGAGATCATTGAGGATGACCCTGAAGAGAAAGTGGTTGATGAAATCGCACACAGACTCATGGAGCCAAAGAAGGATCTAATAGAGCGTGTGGTGAGAGTTATTGGGAAAAAAAAAGCCATCGAGCTTCTGTCAGAGACGGCAACAATTGAACAAAATGGAGGTCTCTACACTGTGGATGGTAGTAGGAGACGGACACCTGGTGGAGTGTATCTGAACTTACTGAAGAACACACCCAGTATCTCTGATGGGCAGGTGAAGGAGATCTTTTATGAGGAGAACCAGAAAGAATACAACAGCAAAAAGGCTGCTAAGAAGCGACGGAAGCAAATTGTTGCGAAGAAGATGAAGCAAGCCATTAGCACGCTCAATCTACAGGAACATGATGACGTGTCACGAGAAACGTTCGCTAGTGACACTGAAGAGGCTTTGGGGTCCCTGGAGGAGGGCCCGTCGGAGTCTGCACTGGGCACAGAGGACAACCCTGTAGTGTACAACACAAACGACCTAGAGGTTTTCTGATGCTCAACACTTACATGCATGTTGTGCTTTCTCGTTCTGTTCTAGTTTTAGTCCCAAAACGGCTTGGAAGGACTTCGACTTTAACTCTCAGGATGAAAGAAGACATTTGATTTGTCATAAATTAGTCAGTAACTGTGGATGTCTGATGTTTTGATTTTGTCCTAAAGTTCACAAATAGCACTTTTAAGTTCTCTACAGGTTGTTAAACTCTTTAGCTCTTTAAAAGACTATCAGAAGCAGCCAAAGGTTGTACAGATTTTCTACAGGTCTTGGCTGGTTTAGAATGATGTTA

Function

symbol description
phax Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

GO:

id name namespace
GO:0006408 snRNA export from nucleus biological_process

KEGG:

id description
K14291 PHAX; phosphorylated adapter RNA export protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00292894_00306187.mRNA True 1414 mRNA 0.49 5 292894 306479

Neighbor

gene id symbol gene type direction distance location
CI01000304_00047400_00073206 NA coding upstream 219556 46322 ~ 73338 (+)
CI01000304_00308220_00310793 NA coding downstream 1194 307673 ~ 311267 (+)
CI01000304_00315935_00342330 LMNB1 coding downstream 8263 314742 ~ 342531 (+)
CI01000304_00370333_00419672 MEGF10 coding downstream 63854 370333 ~ 420755 (+)
CI01000304_00424703_00434890 PRRC1 coding downstream 118224 424703 ~ 435066 (+)
CI01000304_00453663_00453991 CTXN3 coding downstream 147184 453663 ~ 455240 (+)
G418023 NA non-coding upstream 11868 279893 ~ 281026 (+)
G418024 NA non-coding upstream 14912 277261 ~ 277982 (+)
G417901 NA non-coding upstream 24684 168520 ~ 268210 (+)
G417984 NA non-coding upstream 68975 223015 ~ 223919 (+)
G417963 NA non-coding upstream 128222 164220 ~ 164672 (+)
G418047 NA non-coding downstream 134105 440584 ~ 440872 (+)
G418050 NA non-coding downstream 163736 470215 ~ 470572 (+)
G418056 NA non-coding downstream 172200 478679 ~ 478899 (+)
G418004 NA non-coding downstream 215205 521684 ~ 526522 (+)
G418003 NA non-coding downstream 243794 550273 ~ 551981 (+)
G417987 NA other upstream 65041 226703 ~ 227853 (+)
G418059 NA other downstream 251613 558092 ~ 564451 (+)
G418116 NA other downstream 566191 872670 ~ 875249 (+)
G418981 NA other downstream 1786015 2092494 ~ 2093678 (+)
G420445 NA other downstream 3996857 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4866744 5173426 ~ 5176791 (+)

Expression


Co-expression Network