CI01000304_00480135_00531529


Basic Information

Item Value
gene id CI01000304_00480135_00531529
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 479781 ~ 532037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00480135_00531529.mRNA
GTATAAAGCAGCGAGACTCGCGGGCACGAAAGGAGGAGTTGCGGCAAGGTCGCGCAGCATCACGGCGCAAATTAGCCACGGAAATCTCAATTCACAGAGATCATCTGGGTCTTTATAGTCGTTGTGAGCGTACACACCGGGCTGCGCGTCAAACTTGTCAGGAGTTTTTGACTGGACGTGTTGCTATTCTCCATTTGCATCCGCATGTGCGCGTCGCGCTGCGGGTTCGGAGGGAAGCACGGCGCGTTATTTTAGTCTTCCTGCAGCATCAGTGTGTGCGTTCAGTCAAACCCATCGGCTCCTCTGCACTTTTAACGGACAGTATCAGCTTTTGGAAAGCTTTTTTGACTCGTCATGTCAGCGTCACCTCCGCCCTTCGCCGCCCCGGGCGACTATCTGTCTGCGCCCGAACCTGACGCGCTCAAACCCGCCGGTCCGACACCGAGCCAGAGCCGCTTTCAGGTGGATCTGGTGTCAGAATCCACCGGGGACAGTCAGACTCTTGGCACATCCGACTCATCCCCACCCGCGTACGCCACCGAGCCGCCGTCCGACGGACTTCGGGATTCTGTAGCTGGCGGCGAGGAAGCCAAGGGCCGGTTTCGGGTTGTGAACTTTGCGGCCTCGAGTCCGGACGCCGCGCCGGCGGAGAGCGCGCAGAATGGGGACACGGTGATGAGCGAAGGCAGCCTGCACTCCTCCACCGGCGGCCAGCAGCACCATCACTACGACACCCACACCAACACCTACTACCTCCGCACGTTCGGACACAACACTATCGACGCCGTGCCCAACATAGACTTCTACCGGCAGACCGCCGCTCCGCTAGGCGAGAAGCTCATTAGACCTACCCTTTCAGAACTGCACGACGAGCTCGACAAGGAGCCTTTTGAGGATGGGTTTGCTAACGGTGAAGAGTTGACCCCTGCCGAGGAGGCTGCGGCTAAAGAGGCGTCTGAGTCTAAAGGGGTGGTGAAGTTCGGATGGATCAAAGGAGTTCTGGTGCGCTGCATGTTAAACATATGGGGTGTGATGCTCTTCATTCGAATGACATGGATCGTGGGCCAGGCTGGAATTGCGTACTCCTGCATCATTGTTATTATGGCAACTGTTGTGACTACCATCACGGGCTGCTCGACTTCTGCGATCGCAACCAATGGCTTTGTACGAGGAGGTGGAGCGTATTACTTAATATCTCGAAGTTTGGGCCCAGAGTTTGGAGGCTCCATTGGTCTGATTTTTGCCTTTGCCAATGCTGTGGCCGTAGCCATGTACGTCGTGGGCTTTGCGGAAACTGTTGTTGAGCTACTCATAGCTCAGATATTCCTCTTGGTCATTTTGATCACTGCTATTTTCAATTACTTTATTGGGTCCTTCATCCCTGTTGAGTCCAAGGAGAGATTTGGCTTCTTCAGCTATGACACTGGCATCTTGGCGGATAACTTTGGCCCAGACTTTCGAGGAGAAACATTTTTCTCAGTTTTTTCCATCTTCTTCCCGGCGGCCACAGGCATTTTGGCTGGTGCCAACATCTCAGGAGATCTAGCAGACCCTCAAATGGCCATCCCAAAAGGGACACTTTTGGCTATTCTCATAACGGGCCTCGTGTACATTGGTGTGGCCATTTCTGCAGGTGCTTGCATCGTGCGGGATGCTACAGGTATTGAGAGCAACATTACTCTCAGTGGTATTGTAAACTGCACTGATGCGGCCTGTAAGTTCGGCTATGACTTCACTTCCTGCAGACCTACGGTTGAGGGAGAAAAGTCTTCCTGCAAGTTTGGCCTTCACAATGATTTCCAGGTCATGAGTGTGGTGTCGGGCTTCAGTCCCCTCATCACAGCGGGGATCTTCTCTGCGACCCTCTCCTCCGCCCTGGCGTCTCTCGTCAGTGCCCCAAAAGTGTTCCAGGCTTTATGCAAAGACAATATCTATCCTGGAATCGCTGTTTTTGGGAAGGGCTATGGCAAGAACAACGAGCCTTTGCGAGGATATTTACTCACCTTTGCCATTGCCTTGGCCTTCATTCTCATTGCGGAGTTGAACGTCATCGCCCCAATCATTTCCAATTTCTTCCTGGCATCATACGCTCTCATCAACTTCTCTGTGTTTCACGCGTCACTGGCTAATTCCCCCGACACCAGAGTGCTCAAATATCATTAGTGTCAGTATGGTACATCTCAGCCTCTAACACATGTGAGGAATTTTGATTGGGTATGTTATGTGCAGAGTAGATTTTAATATCGGTCATTTTCCATGAATGAGTTAAAGGGGACTTGAAACTGACAGTTTTGTTATTTCAATATAGGGTCAGTGAAATTAGGTGCGTAAAGGCCCTTACCTATTACATAATCACCACAGACCAGTGGTAGTTCGAAGCCGTTAAACAGCCGGAGGGAATTTTTCTGGTTTCTGCTTTGGCAAGCTGTTTATAACTCTTAAAACGAACTTTGTTTTGACCTGATTTTGTTTAAAATGTCACACCAGTTTCAGTTTGTTCTTTTATTTCGCCAGAAGTGTATAATGGCTTTAACATTCAAATGTTGATGTTGACCTCAGAGTCAAAATGTTTTTTTTTTATTTTTTTATATTAGCATATATTTAAAACTGTTACTAAATTATTGGGGCATGTCTATAAAACCTTGATTTATGTGATTTATCATTATTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00480135_00531529.mRNA True 2671 mRNA 0.50 13 479781 532037

Neighbor

gene id symbol gene type direction distance location
CI01000304_00453663_00453991 CTXN3 coding upstream 24541 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 44715 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 59026 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 137258 314742 ~ 342531 (+)
CI01000304_00308220_00310793 NA coding upstream 168514 307673 ~ 311267 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 162424 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 195919 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 225857 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 238996 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 314022 846059 ~ 850379 (+)
G418056 NA non-coding upstream 882 478679 ~ 478899 (+)
G418050 NA non-coding upstream 9209 470215 ~ 470572 (+)
G418047 NA non-coding upstream 38909 440584 ~ 440872 (+)
G418023 NA non-coding upstream 198755 279893 ~ 281026 (+)
G418003 NA non-coding downstream 18236 550273 ~ 551981 (+)
G418058 NA non-coding downstream 25554 557591 ~ 557792 (+)
G418077 NA non-coding downstream 65249 597286 ~ 597663 (+)
G418079 NA non-coding downstream 68503 600540 ~ 600753 (+)
G418081 NA non-coding downstream 69075 601112 ~ 601378 (+)
G417987 NA other upstream 251928 226703 ~ 227853 (+)
G418059 NA other downstream 26055 558092 ~ 564451 (+)
G418116 NA other downstream 340633 872670 ~ 875249 (+)
G418981 NA other downstream 1560457 2092494 ~ 2093678 (+)
G420445 NA other downstream 3771299 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4641186 5173426 ~ 5176791 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010550 NA coding CM030129.1 CM030129.1 34930547 ~ 34931155 (+)