CI01000304_00877256_00878179 (PURG)


Basic Information

Item Value
gene id CI01000304_00877256_00878179
gene name PURG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 876134 ~ 878179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00877256_00878179.mRNA
ATGACATCAGGATACTCGCAGCAGTACGCGAGCAGCAAAGCATCAGACATACAGGAGCTCGCATCCAAGCGCGTGGACATCCAGAAGAAGCGCTTCTACCTGGACGTGAAGCAGAGCACCCGCGGCCGCTTCCTGAAGATCGCCGAGGTGTGGATCGGCCGAGGCAGACACGACAACATCCGCAAGAGCAAACTCACCCTGTCCATGTCCATGGCGCCCGACTTGCGCTACTGCCTGGGCGACTTCATCGATTACTACGCGCACATAGGGCTCCGAGGATGCCAGGCGCCGGACCGCCGACCAGAGGAGCAGAGCAACGGCCAGGGCCGCGCGCTGGAACCCCGCCGGAGAGCAGCGGACCAAGCGGCGTCTCCCATCGGCTCCGCCGCATCAGAGGAGCAGACGCACCGGGTGCTGAAGAGCGAGTTCATCGAGCGGGACAACAGAAAGTACTACCTGGACCTAAAGGAGAACCAGCGCGGCCGGTTTCTGCGCATCAGGCAGACCGTCACCCGAGGACACGGCGGCATGGGTTACTACGGGCAGGGCATCGAGCAGACCATCGTGCTGCCCGCGCAAGGGCTCATCGAGTTCCGAGACGCGCTGTCTCAGCTCATCGACGACTACGGGGACGACGAACCCGAGCGGGCCTGCGCGCGGAACCACGACGAGTCGCCCGAACTGCCCGAGGCGGCGTCGTTCCGCGTCGATAACAAGCGCTTTTACTTCGACGTGGGCTCGAACAGGTTTGGCGTGTTTCTGAAGATCAGCGAGGTCCGGCAGCCCTACAGGAACACCATCACCGTCCCGCTGAAAGCCTGGGCGCGCTTCGGGGAGAACTTCATAAGGTACGAGGAGGAGATGCGACACATCTTCAGCTGTCATAAAGAGAAGAGGACAGACACGGAGGAGCACGAGGATTGACGCAGACTACTGTTTCTGATCTTTCTCTTGTTAGTTGTACCTCTAGCGGACGGTCCGGCCCCTTCTGTTCATGGCCATTATTGCAGTTGATATGAATCTAGGCAGAATCCAAACGGCTCGTCCCTGTGCAGAGAGGCTCTGCTGGGGTTGCAGTGTGTGTGTGGGACCGGACAGGTGCAGTATTTCAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGTGTGATAGCATTAGGACTTGGTCTCTTGCATCCAATGCTTCTTCCTGGGCTTTACATGTATGAGGCTGCTGTGCAATTTCTCAGAGCTGGGAATCAAATAATCAAGATCTTATCAAGCACTTATGTCAGAGATACACTGCACACGTTCGTCCTGAACGATCGAGTGCTGGAGTATTTTGATGGTCCAAAGTGAGGGTTTTTCCCCCCTTTTGAAGCTTGAAGTCTGACTTCATCTCAATGATCAAAAGAATGGCTACACTTTGCCATTGCACAAACACATTACTTTCCCCATCTGAAATCAGACACCAAAAAGTGCATTTAATATTTACATTATTTGGATGAATTATTTACACACTAGCCTAATGAAAAATATCCAATTTAATGAGGTGCTTGAACTATAGAGCTTCAAATATGACATTGTGTGGCTTTAGCATAAATGATGAAGGCACACACCAAGATTAGGTTTATTTAAAAGCGTTTAAACATGGCTTTAAATAATGGATTTTTTCCATCTCTCTGACAAGACAAATGCTGAATCACTCTTGATAGGTGTGCAATATTATTTTCATCAGTCCCTGTCAGTGGGATTAAACGAGAACTGTGCAAAAGCAAAGCGAACATAAATGGGCTGTTTAAATATGTTTGTTTTAAATAGCAGAATGTAATATAGCTAGGTTTGGATGGTTATGTGAGGTGTTGCATTATGGATTTACACAGATCTAAAAAAAAAAAAAAAAAAAAAAGGTTAAATGCGTTTGACATGATGTCATTCTGTTCAAAACAAGCTGTATTTAAAACAACATATTATCATACATATTTTCTACTGCATAACTAATAATTAATAATCATTCCTTTTTTAAATGGCGTAGGATAAAATAAA

Function

symbol description
purg Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURG (purine rich element binding protein G).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00877256_00878179.mRNA True 2046 mRNA 0.49 1 876134 878179

Neighbor

gene id symbol gene type direction distance location
CI01000304_00862451_00870277 NA coding downstream 3705 862153 ~ 872429 (-)
CI01000304_00852998_00861119 PPP2CA, PPP2CB, CDKL3 coding downstream 14767 852946 ~ 861367 (-)
CI01000304_00843412_00844705 HINT1 coding downstream 31429 843295 ~ 844705 (-)
CI01000304_00748608_00750261 NA coding downstream 124602 748315 ~ 751532 (-)
CI01000304_00682765_00692613 NA coding downstream 183478 682509 ~ 692656 (-)
CI01000304_01030191_01033191 FUT10 coding upstream 150993 1029172 ~ 1033191 (-)
CI01000304_01054942_01133130 NA coding upstream 176763 1054942 ~ 1133130 (-)
CI01000304_01186035_01200177 SLC38A9 coding upstream 307682 1185861 ~ 1200808 (-)
CI01000304_01216763_01232729 DDX4, VAS coding upstream 338537 1216716 ~ 1232729 (-)
CI01000304_01365055_01365447 NA coding upstream 486622 1364801 ~ 1365559 (-)
G418530 NA non-coding downstream 828 872672 ~ 875306 (-)
G418563 NA non-coding downstream 36777 838856 ~ 839357 (-)
G418558 NA non-coding downstream 41972 833946 ~ 834162 (-)
G418556 NA non-coding downstream 47291 828514 ~ 828843 (-)
G418499 NA non-coding downstream 139062 736869 ~ 737072 (-)
G418567 NA non-coding upstream 7627 885806 ~ 889909 (-)
G418573 NA non-coding upstream 24663 902842 ~ 905854 (-)
G418576 NA non-coding upstream 31461 909640 ~ 916578 (-)
G418584 NA non-coding upstream 48325 926504 ~ 926783 (-)
G418598 NA non-coding upstream 55956 934135 ~ 934364 (-)
G419353 NA other upstream 1351205 2229384 ~ 2236106 (-)
G419354 NA other upstream 1384323 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3385566 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 3783637 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 5599272 6480743 ~ 6483986 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010650 NA coding CM030129.1 CM030129.1 38277317 ~ 38278369 (+)