CI01000304_01173248_01184405 (SH2D4A)


Basic Information

Item Value
gene id CI01000304_01173248_01184405
gene name SH2D4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1172137 ~ 1184529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01173248_01184405.mRNA
GCATATAAAGCACCCTTCATGAAACTGAATGAGTCTTTCACAGTACGTAGCCGGACTGTAGGAGGGAACTCAGTTTGAGCTGTAAGGGTTGAGTTAGGGTGTGTACATTACCACAGACTTCACTCGACATTACCTTTCTCTACAGGTTTCTTCAAAAGTCAGGTGTTCTAACCAACATGAAGCTTTATAGTCAGCAGATTGGTCTGGATTCTTTATAGACACATCACTGATGTGCTGCACTGATCGTCACGCGAGTAAAGAGTGTGTGAATCCTTCCTTCTAGCGGTAAGTGTGTCAGATTGGTTTCGATGTAGCATTAATTGATTGACGGCCTTTTGTCCTGCTTCCTGTTCCTTGTTTACATTGGAATTTTGACTGTATCAGATTTTTGTTAGTTGTTCAAATATGTGTGTCGAAATTTAACCGATATCAACCTTTTAATTTTATTCGCAGAATTGATTTCCACTTGTACTGTATATTTATGAAAAAATAATATTTTAATTGTATGTATTAATGTCATATTATATTTTAATTTCCATCTAAAAGTATTATGGTAATACTATGTTTTTGGCTTTTTTGTTGTTGTTGTTGTTGTTGTTGTGTTTTTTGACATTTTTTTTTACTAAGTACTATGAAGACCAGTATCACTGATAGGCCTGTTCATGCCTCTTATTAATGTAATTATTTTATTTTATTTTATTATTTTTTTATTTTTTTGTGGAGATAATTAAATTCTTTATAATAACAGCCATTTAACATTACAGCATAATTGAAACCCAGGTCTAAACTGCAAATTATCAAATTTATATTTAACAATTACACACCTTTAAAAATATAAGAATTTAAGTGAATTTAAAGCTAAATTACCAAACCCATTGAAATGTCACATTTATATAGTATGTTTGGTGATGTTTCTGTCTCTAAATACTCTATCAGCCCTCTCTGGGATAGTTTACCCATTGGCCATAATTTACTCTGCATGACCTCCTTTGGTGTTGTTTCTTTTGTATCATGAAATGTTTCTGTTTTACACAGTCCAAACCCACGGAGACCAAGAGACGGACATTCCCTTGCTGAAGTTCTCGGAGCTGTGTGTTACTGAGACGTGAAGATGCTGCAGCAGATACTGGCTGACATGTACATTGAGCCGGAGCTGCTGGCCGAGCTGAATGAGGAACAGAAACAGGTGCTGTTCTTTAAGATGAGAGAAGAACAGATCAGGAAATGGAGAGAAAGAGAGACACAGCTGGAGAAGGAGGAAGCTGCAAGTGTGAAAGTCAAAAAAGTTTCAGGAAAGTGTGTGTCATGGATGAAGGGTCTGGATGATGATGTGTGGGTTTGGGTGATGGGAGAACATCATGACGACAAACCGTACGATAAAATCTGTGACGAGATCATGAACGAGAGAGCAGCGCTGCAGGCGCAGAGAGAGGCTGAGCAGCTCAGGGCTAAGAAAGAAGCTGAGCTGGAGAAGCGTTTCTCTGGACTGTATCTTGAACCGGAGCAGGTTGTGTTGTCGGAACAGGAAGTCCAGCTGAAGGCCAGGCAGGCTGCAGCTCTGGAACAGAGAAGGGCAGACGAGGAACTCAAGAAGCTAGAGTTGGAGGAGCGACGTAAGGCTGAGGAGGAGCTGAGAAGGTTGGAGCAGGAGAGGAAGCAGCAGATTTACATGAGCCTGAAGGAGGTGCAGAGCAGCAAACAGACGCATGATGAGCAGGACAAGGACTGGCAGCAGACATTGATGCATATGCTGTACAATAGGAAAAACTGGTGTGATTTTGCATATGTGGTTCCAGTGCAGAAGTCAAAAGCCGCAGACATGCGCAGACGATCTATTGCCAAGCAGACGATCGAGGACCACCGCAGGCGCTCAGTGAAGGCTCTAGAAAGAGGACGTGTAGCGGCCATGACAAAGGCCTTCGGCAGCACAAACCCAACCCTTCCACCTAAACCCAAACCCAGAAACACCAGCGGTGCCATCAGCCGGAAGGGTGGTATGCGACGCTCACTGTCAACGTCTAGTCGAGATCATATTATTCGTTGGTTCCAGGAGGAGCAGTTGCCCCTCAGAGCAGGATTCCAGCGTGACCAGAGCCGAATCGCCCCCTGGTTTCACGGTATAATATCTCGTGAACAGGCAGAGGCGCTACTGAATGATGGCGAGCCTGGGCTCTTCTTGGTGCGTGTTAGTGAAAGAATATTTGGATATGTTCTTTCCTATCGCTCCAAAGAGGGAATCAAGCACCTGCTGATCGATGCTTCAGAGAACTGCTACATGCTGCTGGGAGACCAGATCAAATTCTCATCACTCAGTGAACTAGTGGAATATCATCAGGTGGAGCCGCTGAGCTCATCTGGAGAAGAGGAGTACCTGCTACAGGCATGTGGACAGAGAGAGGCCACAGTAGATTATACAGAGCTCTTCACCTGACCCCCAAACTCACCAACAGTTAGAAGAACATGTGGAGAACATCTGCGCCTAACACTGTGATCAGCACTGGCAATACACTAAAGTGAATAATAATTGCAAAATCACATGTGAAGACAAAGTCATA

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

NR:

description
Zgc:56186

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K17577 SH2D4A; SH2 domain-containing protein 4A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01173248_01184405.mRNA True 2555 mRNA 0.43 8 1172137 1184529

Neighbor

gene id symbol gene type direction distance location
CI01000304_00983004_01018406 NRG1 coding upstream 153444 982912 ~ 1018693 (+)
CI01000304_00962923_00975418 NA coding upstream 196493 962753 ~ 975644 (+)
CI01000304_00933179_00942864 NA coding upstream 228272 931798 ~ 943865 (+)
CI01000304_00884782_00917034 WRN coding upstream 255103 884490 ~ 917034 (+)
CI01000304_00846138_00850133 NA coding upstream 321758 846059 ~ 850379 (+)
CI01000304_01269500_01313976 PPIP5K2 coding downstream 83494 1268023 ~ 1314632 (+)
CI01000304_01323957_01324596 C16H5ORF30, CUNH5ORF30 coding downstream 139428 1323957 ~ 1326322 (+)
CI01000304_01337171_01361506 CHD1 coding downstream 152642 1337171 ~ 1361506 (+)
CI01000304_01366207_01367994 DCP2 coding downstream 181591 1366120 ~ 1368002 (+)
CI01000304_01369056_01372878 DCP2 coding downstream 184067 1368596 ~ 1372972 (+)
G418257 NA non-coding upstream 5539 1166295 ~ 1166598 (+)
G418256 NA non-coding upstream 5944 1165944 ~ 1166193 (+)
G418253 NA non-coding upstream 9006 1162022 ~ 1163131 (+)
G418248 NA non-coding upstream 18565 1153175 ~ 1153572 (+)
G418108 NA non-coding upstream 95412 1064027 ~ 1076725 (+)
G418113 NA non-coding downstream 21062 1205591 ~ 1206410 (+)
G418649 NA non-coding downstream 22181 1206710 ~ 1206976 (+)
G418691 NA non-coding downstream 147805 1332334 ~ 1332597 (+)
G418667 NA non-coding downstream 180485 1365014 ~ 1365559 (+)
G418694 NA non-coding downstream 191432 1375961 ~ 1376294 (+)
G418116 NA other upstream 296888 872670 ~ 875249 (+)
G418059 NA other upstream 607686 558092 ~ 564451 (+)
G417987 NA other upstream 944284 226703 ~ 227853 (+)
G418981 NA other downstream 907965 2092494 ~ 2093678 (+)
G420445 NA other downstream 3118807 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3988694 5173426 ~ 5176791 (+)
G421162 NA other downstream 5056704 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 6168120 7352621 ~ 7354396 (+)

Expression


Co-expression Network