CI01000304_01186035_01200177 (SLC38A9)


Basic Information

Item Value
gene id CI01000304_01186035_01200177
gene name SLC38A9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1185861 ~ 1200808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01186035_01200177.mRNA
AAGACTCCAAGCAACATGAATCGTAATCTACTTACACTGCGTATCAACAGGATTTAGTGTTGATTAGATTTGCTTTCTGAATAACTTTGCTTTTGCGTGCTGAATATTTAGATTATCTTCACTGTTGTGGTAATAATAAATTTAAAGATACAATTTTGATCGTTTAATCAAACTTGTAAAGTCATAAAAAAACAAATATCTCCTCCGGACCTCACTTTTGGACACTACTGTACATAATGAATAGATGTAAAAGTTATTGGCAGTGGCTGTGCCAGTGTCCTGCCGGATGTTACTCATAGGACAGGAATCTCTGTGCTGCTGTTTTGTGTTCTCTTCTGTGGAATGACGCTTTAGAGTCTGTGTGTGACATGTCTCATCATGTCCTATCCATTTATTTGTATGTTCAGGTTTTGAAGTGTCATTTCAAATATACATGTCTGCCTTTTTACACTGGAAATTGATACTTAAGTTTTGACCTCTCTGTCAAAAGTCTTCAAATGTTTGGCTGTTAGTGTGGTGCTTTTGAGGAGTGAACCATCTTTCATATTCAACCGTCTCAGATCTGGGTTTAGTGTTCTTGTTTGTTTGTCCAACTGTTTAGGTGATGACGGTTTAAACGACACACAGCATCATGGATGAGGACAGTAAACCGTTACTAGGATCAGTGCGAGCTGGGGAGTATTACACGGATTCACTGGACCCCAAGCAAAGAAGACCGTTCCATGTGGAGCCCAGGAATATTGTGGAGGATGATGCTCAGGAGAGAGTGTCTGCTGAAGCTGCGGTACTGAGCAGTAGAGTTCATTACTACGGCCGTCTGACAGCCTCCTCAGACAGACTGCTGGCACCTCCAGACCATGTGATTCCTTCTCTTGAGGACATCTATATCTACAGTCCACTGGGAACAGCGTTCAAAGTGCAGGGAGGCGACAGCACTGCCAAAAACCCCAGCATTGTCACAATTTTTGCCATATGGAACACTATGATGGGAACATCTATATTAAGTATACCATGGGGAATAAAACAAGCTGGTTTCACTCTGGGCATCATCATCATTGTTCTTATGGGCCTGCTGACACTCTACTGCTGCTACAGAGTATTAAAGTCCACAAAGTCCATACCTTATGTGGATACCTCAGACTGGGAGTTTCCTGATGTGTGTAAATATTACTTTGGGGCATTTGGAAAATGGTCGAGTCTCATCTTCTCACTGGTGTCACTGATTGGTGCGATGGTGGTCTATTGGGTTCTCATGTCCAATTTCCTTTTCAATGCAGGGAAATTCATTTACAACTATGTTCACAATGTCAGCACATCAGATACTTTTGGTACAAATGGAACAGATAGAGTGATATGTCCGTATCCAGATGTGGATCCAGACAGGAACAGCAGCGGCATTCTCCTGTACTATGCGACTGAGAACAGCACTGGTCATGTGTTTGATCTCTGGTGGAGCAAAACCAACACCATCCCATTTTACCTCATTGTTCTGCTGCTGCCACTGCTCAATTTCCGCTCAGCTTCTTTCTTCGCCAGGTTCACTTTCCTAGGCACTATATCGGTGCTCTATCTCATCTTTTTGGTCACATATAAAACTATTCGACTGGGCTTTCACCTGGAGTTCCACTGGTTCGATTCATCAACGTTTTTTGTTCCAGAGTTCAGATCACTGTTTGTTCAGCTGAGCGGGGTTCTCACATTAGCATTTTTCATTCACAACTGCATCATCACGCTTATGAAGAACAACAAACATCAAGAAAACAATGTGCGGGATCTGTCCTTGGCTTACCTGCTGGTGGGATTGACATACCTCTATGTGGGAGTGCTGATCTTTGCTGCTTTCCCATCACCACCGCTGTCTAAAGAGTGCATTGAACCAAACTTCCTGGATAACTTTCCCAGCAGTGATATCCTAGTGTTTATAGCGAGGACCTTCCTTCTGTTCCAGATGACCACTGTGTATCCTCTGCTTGGGTACCTGGTGCGCGTGCAGCTCATGGGCCAGATCTTTGGGGACCATTACCCAGGTTTCTTTCATGTCTTTTTCCTGAACATCCTTGTTGTCGGAGCTGGAGTTCTGACGGCCAGGTTTTACCCCAACATTGGTTCAATCATCAGGTATTCGGGGGCCATCTGTGGCCTGGCTCTGGTGTTTGTGCTTCCTTCTCTGATCCACATGGTGTCACTCAGACGCAGAGGTGAGTTACGCTGGCCCTCGGCGCTCTTCCATGGCTTTCTCATCCTGCTCGGAGTGGCCAATCTGTTCGGACAGTTCTTCATGTGACACGCTGGGCCTTAAATCAGTTGCACACCCTCTGGTTTCTCGGGGTGATTTTCATAGGAATGAAGTCCTGGTAGTACTAACCTACTAAACAAGTACAGGTGAATTTCATTACAAGAAACTCACTCAAAGGCACCAAACGTCTAAGTTTTGACATTTTAAAAGGATTTAATTAAA

Function

symbol description
slc38a9 Enables arginine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within amino acid transport. Is integral component of membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9).

GO:

id name namespace
GO:0006865 amino acid transport biological_process

KEGG:

id description
K14995 SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01186035_01200177.mRNA True 2458 mRNA 0.44 14 1185861 1200808

Neighbor

gene id symbol gene type direction distance location
CI01000304_01054942_01133130 NA coding downstream 52731 1054942 ~ 1133130 (-)
CI01000304_01030191_01033191 FUT10 coding downstream 152670 1029172 ~ 1033191 (-)
CI01000304_00877256_00878179 PURG coding downstream 307682 876134 ~ 878179 (-)
CI01000304_00862451_00870277 NA coding downstream 313432 862153 ~ 872429 (-)
CI01000304_00852998_00861119 PPP2CA, PPP2CB, CDKL3 coding downstream 324494 852946 ~ 861367 (-)
CI01000304_01216763_01232729 DDX4, VAS coding upstream 15908 1216716 ~ 1232729 (-)
CI01000304_01365055_01365447 NA coding upstream 163993 1364801 ~ 1365559 (-)
CI01000304_01403041_01410830 APH1A coding upstream 202084 1402892 ~ 1410830 (-)
CI01000304_01416856_01418996 NA coding upstream 215841 1416649 ~ 1419347 (-)
CI01000304_01422089_01435801 TPM2 coding upstream 221281 1422089 ~ 1435801 (-)
G418589 NA non-coding downstream 1301 1182875 ~ 1184560 (-)
G418594 NA non-coding downstream 7167 1177781 ~ 1178694 (-)
G418647 NA non-coding downstream 9853 1175767 ~ 1176008 (-)
G418595 NA non-coding downstream 10638 1173181 ~ 1175223 (-)
G418593 NA non-coding downstream 13048 1172198 ~ 1172813 (-)
G418652 NA non-coding upstream 10822 1211630 ~ 1211873 (-)
G419213 NA non-coding upstream 55872 1256680 ~ 1256965 (-)
G419238 NA non-coding upstream 114577 1315385 ~ 1315588 (-)
G419239 NA non-coding upstream 116468 1317276 ~ 1317517 (-)
G419246 NA non-coding upstream 123163 1323971 ~ 1328397 (-)
G419353 NA other upstream 1028576 2229384 ~ 2236106 (-)
G419354 NA other upstream 1061694 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3062937 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 3461008 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 5276643 6480743 ~ 6483986 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001886 slc38a9 coding NC_007121.7 CM002894.2 6907715 ~ 6944407 (+)