CI01000304_01216763_01232729 (DDX4, VAS)



Basic Information


Item Value
gene id CI01000304_01216763_01232729
gene name DDX4, VAS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1216716 ~ 1232729 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000304_01216763_01232729.mRNA
GACCCAAGGTTGTCTATGTGCCGCCTCCCCCTCCAGAAGACGAGAATTCCATATTTTCCCAATTTGCCACAGGCATTAATTTTGATAAATATGATGATATCCCTGTGGAAGTGAGCGGCAGCAATGCTCCAAAAGCGATTATGACTTTTGATGAAGCAAAGCTTTGTGAATCACTGAGCAAGAATGTAACAAAGTCTGGATATGTGAAGCCAACTCCTGTCCAGAAATATGGAATCCCCATTATTTCTGCTGGACGAGATCTAATGGCTTGTGCCCAGACCGGATCAGGAAAAACGGCAAGAACAACCTTCTTGCATCCTGCGGCCTTCCTGCTGCCCATCTTACAGCGGTTTATGACTGATGGAGTGGCAGCCAGCAAGTTCAGTGAGGTGCAGGAGCCCGAGGCCATAATCGTGGCCCCCACCAGAGAGCTTATCAATCAGATCTATCTGGAGGCCAGGAAGTTTGCATATGGGACCTGCGTGCGTCCTGTGGTGGTTTATGGTGGTATTAATACTGGATATACTATTCGAGAGGTGTTAAAGGGCTGCAATGTTTTGTGTGGGACCCCTGGAAGATTGCTTGACATCATTGGTCGTGGAAAGGTTGGCCTCAGTAAGTTACGGTATTTGATTCTGGATGAAGCAGACAGAATGCTAGACATGGGCTTTGAGCCAGATATGCGCAAGCTAGTGGGATCTCCAGGAATGCCTGCCAAAGAGGATCGACAAACCCTCATGTTCAGTGCCACCTTCCCTGAAGAAATTCAAAGGTTGGCAGCAGAATTTTTGAAAGTGGACTACCTTTTCCTTGCTGTTGGTGTGGTGGGTGGAGCATGCAGTGATGTGGAGCAAACGATCATTCAGGTGGACCAGTACTCCAAGAGAGAGCAGCTGCTTGAACTGCTCAAAACTACGGGGACTGAACGCACAATGGTCTTTGTTGAAACCAAAAGAAGTGCTGACTTCATAGCAACTTTCCTCTGTCAGGAGAAGATCTCCACTACAAGCATCCACGGTGATCGGGAACAGCGGGAGCGAGAGAAAGCTCTCAGTGACTTTCGCACAGGCCAGTGTCCAGTGCTGGTTGCCACATCTGTTGCTGCCAGAGGCCTGGACATTGAGCATGTGCAGCATGTGGTAAATTTCGACCTGCCCAACAACATCGATGAATATGTCCATCGCATTGGAAGAACCGGACGCTGTGGGAACATTGGTCGGGCCGTGTCCTTTTTTAACCCAGAGTCAGATACTCCATTAGCTCGCTCTCTGGTCAAAGTCCTTTCAGGGGTTTGTACTTCTCGCTTCTGACACTTCATATTGATTTAAAAAAAAAAAAAAAAAAAAAAATCAACAAA

Function


symbol description
ddx4 Predicted to enable RNA binding activity and RNA helicase activity. Acts upstream of or within germ cell development; gonad development; and regulation of meiotic cell cycle. Located in P granule. Is expressed in several structures, including blastodisc; germ line cell; reproductive system; shield; and unfertilized egg. Orthologous to human DDX4 (DEAD-box helicase 4).
vas Enables RNA helicase activity and mRNA 3'-UTR binding activity. Involved in several processes, including mitotic chromosome condensation; oogenesis; and positive regulation of translation. Located in several cellular components, including P granule; posterior cell cortex; and spectrosome. Is expressed in several structures, including germline cell; gonad; gonadal sheath proper primordium; and pole bud. Orthologous to human DDX4 (DEAD-box helicase 4).

NR:

description
Vasa protein

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13982 DDX4, VASA; probable ATP-dependent RNA helicase DDX4

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000304_01216763_01232729.mRNA True 1357 mRNA 0.48 8 1216716 1232729

Neighbor


gene id symbol gene type direction distance location
CI01000304_01186035_01200177 SLC38A9 coding downstream 15908 1185861 ~ 1200808 (-)
CI01000304_01054942_01133130 NA coding downstream 83586 1054942 ~ 1133130 (-)
CI01000304_01030191_01033191 FUT10 coding downstream 183525 1029172 ~ 1033191 (-)
CI01000304_00877256_00878179 PURG coding downstream 338537 876134 ~ 878179 (-)
CI01000304_00862451_00870277 NA coding downstream 344287 862153 ~ 872429 (-)
CI01000304_01365055_01365447 NA coding upstream 132072 1364801 ~ 1365559 (-)
CI01000304_01403041_01410830 APH1A coding upstream 170163 1402892 ~ 1410830 (-)
CI01000304_01416856_01418996 NA coding upstream 183920 1416649 ~ 1419347 (-)
CI01000304_01422089_01435801 TPM2 coding upstream 189360 1422089 ~ 1435801 (-)
CI01000304_01439737_01500518 TLN1 coding upstream 206573 1439302 ~ 1500640 (-)
G418652 NA non-coding downstream 4843 1211630 ~ 1211873 (-)
G418589 NA non-coding downstream 32156 1182875 ~ 1184560 (-)
G418594 NA non-coding downstream 38022 1177781 ~ 1178694 (-)
G418647 NA non-coding downstream 40708 1175767 ~ 1176008 (-)
G418595 NA non-coding downstream 41493 1173181 ~ 1175223 (-)
G419213 NA non-coding upstream 23951 1256680 ~ 1256965 (-)
G419238 NA non-coding upstream 82656 1315385 ~ 1315588 (-)
G419239 NA non-coding upstream 84547 1317276 ~ 1317517 (-)
G419246 NA non-coding upstream 91242 1323971 ~ 1328397 (-)
G419353 NA other upstream 996655 2229384 ~ 2236106 (-)
G419354 NA other upstream 1029773 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3031016 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 3429087 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 5244722 6480743 ~ 6483986 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location