Item | Value |
---|---|
gene id | CI01000304_01216763_01232729 |
gene name | DDX4, VAS |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 1216716 ~ 1232729 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
ddx4 | Predicted to enable RNA binding activity and RNA helicase activity. Acts upstream of or within germ cell development; gonad development; and regulation of meiotic cell cycle. Located in P granule. Is expressed in several structures, including blastodisc; germ line cell; reproductive system; shield; and unfertilized egg. Orthologous to human DDX4 (DEAD-box helicase 4). |
vas | Enables RNA helicase activity and mRNA 3'-UTR binding activity. Involved in several processes, including mitotic chromosome condensation; oogenesis; and positive regulation of translation. Located in several cellular components, including P granule; posterior cell cortex; and spectrosome. Is expressed in several structures, including germline cell; gonad; gonadal sheath proper primordium; and pole bud. Orthologous to human DDX4 (DEAD-box helicase 4). |
description |
---|
Vasa protein |
id | name | namespace |
---|---|---|
GO:0016787 | hydrolase activity | molecular_function |
id | description |
---|---|
K13982 | DDX4, VASA; probable ATP-dependent RNA helicase DDX4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000304_01216763_01232729.mRNA | True | 1357 | mRNA | 0.48 | 8 | 1216716 | 1232729 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000304_01186035_01200177 | SLC38A9 | coding | downstream | 15908 | 1185861 ~ 1200808 (-) |
CI01000304_01054942_01133130 | NA | coding | downstream | 83586 | 1054942 ~ 1133130 (-) |
CI01000304_01030191_01033191 | FUT10 | coding | downstream | 183525 | 1029172 ~ 1033191 (-) |
CI01000304_00877256_00878179 | PURG | coding | downstream | 338537 | 876134 ~ 878179 (-) |
CI01000304_00862451_00870277 | NA | coding | downstream | 344287 | 862153 ~ 872429 (-) |
CI01000304_01365055_01365447 | NA | coding | upstream | 132072 | 1364801 ~ 1365559 (-) |
CI01000304_01403041_01410830 | APH1A | coding | upstream | 170163 | 1402892 ~ 1410830 (-) |
CI01000304_01416856_01418996 | NA | coding | upstream | 183920 | 1416649 ~ 1419347 (-) |
CI01000304_01422089_01435801 | TPM2 | coding | upstream | 189360 | 1422089 ~ 1435801 (-) |
CI01000304_01439737_01500518 | TLN1 | coding | upstream | 206573 | 1439302 ~ 1500640 (-) |
G418652 | NA | non-coding | downstream | 4843 | 1211630 ~ 1211873 (-) |
G418589 | NA | non-coding | downstream | 32156 | 1182875 ~ 1184560 (-) |
G418594 | NA | non-coding | downstream | 38022 | 1177781 ~ 1178694 (-) |
G418647 | NA | non-coding | downstream | 40708 | 1175767 ~ 1176008 (-) |
G418595 | NA | non-coding | downstream | 41493 | 1173181 ~ 1175223 (-) |
G419213 | NA | non-coding | upstream | 23951 | 1256680 ~ 1256965 (-) |
G419238 | NA | non-coding | upstream | 82656 | 1315385 ~ 1315588 (-) |
G419239 | NA | non-coding | upstream | 84547 | 1317276 ~ 1317517 (-) |
G419246 | NA | non-coding | upstream | 91242 | 1323971 ~ 1328397 (-) |
G419353 | NA | other | upstream | 996655 | 2229384 ~ 2236106 (-) |
G419354 | NA | other | upstream | 1029773 | 2262502 ~ 2266241 (-) |
CI01000304_04263955_04264962 | NA | other | upstream | 3031016 | 4263846 ~ 4265201 (-) |
CI01000304_04661808_04672936 | PPWD1 | other | upstream | 3429087 | 4661766 ~ 4672947 (-) |
CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | upstream | 5244722 | 6480743 ~ 6483986 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
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