CI01000304_01323957_01324596 (C16H5ORF30, CUNH5ORF30)


Basic Information

Item Value
gene id CI01000304_01323957_01324596
gene name C16H5ORF30, CUNH5ORF30
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1323957 ~ 1326322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01323957_01324596.mRNA
CCAGGTCATGTCACTAAAGATGGAAATGGATGCCAGTGGAACGTCCAGGGCACCCATATCTGTTCTGTCTGCTGCTGAGGTCAAAACCACCCTGAAGCCTGAACCCGACAAACCCCGATGCTCCAGTACTCCCTGCTCCCCGATTAAAAGTACTGTCTCAGGATACCAAATCCTTCACATGAACTCCAACTATCTAGTGGGCTTCACCACTGGTGAGGAGCTTCTTAAATTAGCCCAGAAGTGGTCTAGTCCTGACAACAGCAACACAGAGGCCTTGCCCAGCCCCATCAAAAAGCCTGTGGATGTAAGTCTGCACCGAGCCTCACGGATTTGCAAAGCCAAAAGCCGCTACTACCAACCATATGACATCCCAGCCATCAACGGACGTAGGAGGCGGCGCATGCCCAGCTCAGGCGACGGCTGCTTGAAATCTCTAGTGAGCGGGGAGCCCGGCAAGGCTTTACATGGCCCGCTGCCCCTCTGCCTGTTAAAAGGCAAACGGGTGCACTCCAAGTCCCTGGACTACCTCAATCTAGACAAGATGAGCCTCAGGGAGCCGGCGGACACTGAAGTGCTGCAGTACCAGCTGCAGCATCTGAATTTGCGGGGCGAGCGTGTGTTTACCCGCAACAAGACATGAGTCCTCAGATGCCCAGCACTGCAATGCTCACCTGCCCGGCTGCAATGTAGGGCCTTGATTTTTACCACTCTTCCCCACTACGCCATACATAGACCACTAATCTTCTTTGTTAACCAGAGGTGTGATGAAACACCGTGAGGCCCAGTTAGGGGAAACTTTAAAGGAGTAGTTCATCTGTCATTATGTACTCACCCTCATGTTCTTTCACACTGTTATTTTTTGTTTCTATGGAATAAAAAAAGCTCATTTTATACAAGAACAGTTGTTGGTGACCACAGCTGTCACATCCATATGGATATATGTGCTATATTCAAAGTTTGCTAAAGACATAGCTTTGTGTGGGGAACAGGCCAAAATTTGTTATTGATGCGAAAGCTCTGAAATTTCATCTGTGTCCAGCAAAGAAAGACTTTGATTTCAGTCTGTCACACAAAACTATCAAGATACTTTGGAAAACTTGGAATAAAAGTTGTACTATCGCTATATAGAGTTGTAGCGTAGTCAGACTAATTATATGGTGGGGCTGCACGACTAATCGAAATAAGACCAACATCACAAAATGGCTTAGTGCGATTGTCAAATCGCAAAGGCTACAATGTAATTAAATAAATACCTGTATATGTGTGTTTCAGAGTGAAGCATGGCACTGTGTTCCTTTACACACGAGCAGCTCAAGATCTGGTGTTTTCTGCATCTGCTTTGAGTTTGAGTCGCTTTAACGTGCGTTTGGGAACAACAACATGAGACAACCATCTTCACAAACTTGTAATGAGAGGCTGTTGTCAACAAAAGAGAAATTTTGAGGGCTCCCTTTAGTTTTCCGCCCCAAAAAAGGTTTAATTTTTGAAAAGGAATTAAGACAGCCATAAACATTATAGTATTGTAATTTATGGTGCAGCCCTACAAACAAGTACATTAAACCTGGAGATGTTTTTATAAGTCACATTTTAAATCGCAATCTCAGTTTGAAATTGTGCAGCCCTATTATATGTGTTTTTATAGAACTAGTGTCAAAGTGACAGATAGGGCTGGGACAATTAATCGATTCTCGATTCACAATACAATGATTCTGGATCGATTCTTATATTTTCTTTCCCGAATCGATTCTGAGCTTAGTTTTAACAGCAGATGGCACTCTATGCTAGTTTTTAACCACACACTCAAATGCTCATGAAGAAGAGTACTGGACAGCGATCGTGTGTTCGGCTGAGTCATGTAAGTGGTTAAATATAGTTACACCTCGGCTCAGAATGCTTTTATGACGTGAGATTAATGTAAACACAGCCCACTGTGAACTCCCTTGTAATTCGCTTCAACCTTTTCGAACTTTATGAATGATTATTTTAGGTTTAAGTGGTGTGTGTAAAGGAACTGGAAGCAAGCAGAGTACGGGTGTTTCTATAGCCTGTAGTGCCATCTGCTGTTAAAGACTAAGCTCAGAATTTCGCGAGAATCACGATACATTGGAAAATATCAGAAATGCTAGATTCTTTGTATCTTGAATCAATGTATTGTCCCAGCAGACATAGTCATTATGAACTGATTTGTATGAAAAAAAGAACTGTATTAACCTTTTTTTCCTCCCTCCTTTTTCAGTTTGGAAAGACATGAGGGTGAGTAAATAATGACATGAGAATGAATCCTTTATCCCCGCAATGAATCATTGTATAAGTGTGTATTACAGGGCATACATTCATTGTCATGGTGAGTTTTTTTAAGATTAGCA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01323957_01324596.mRNA True 2366 mRNA 0.43 1 1323957 1326322

Neighbor

gene id symbol gene type direction distance location
CI01000304_01269500_01313976 PPIP5K2 coding upstream 9325 1268023 ~ 1314632 (+)
CI01000304_01173248_01184405 SH2D4A coding upstream 139428 1172137 ~ 1184529 (+)
CI01000304_00983004_01018406 NRG1 coding upstream 305264 982912 ~ 1018693 (+)
CI01000304_00962923_00975418 NA coding upstream 348313 962753 ~ 975644 (+)
CI01000304_00933179_00942864 NA coding upstream 380092 931798 ~ 943865 (+)
CI01000304_01337171_01361506 CHD1 coding downstream 10849 1337171 ~ 1361506 (+)
CI01000304_01366207_01367994 DCP2 coding downstream 39798 1366120 ~ 1368002 (+)
CI01000304_01369056_01372878 DCP2 coding downstream 42274 1368596 ~ 1372972 (+)
CI01000304_01375020_01379551 NA coding downstream 48549 1374871 ~ 1379816 (+)
CI01000304_01392985_01399147 CA9 coding downstream 66663 1392985 ~ 1399153 (+)
G418649 NA non-coding upstream 116981 1206710 ~ 1206976 (+)
G418113 NA non-coding upstream 117547 1205591 ~ 1206410 (+)
G418261 NA non-coding upstream 143940 1179814 ~ 1180017 (+)
G418257 NA non-coding upstream 157359 1166295 ~ 1166598 (+)
G418256 NA non-coding upstream 157764 1165944 ~ 1166193 (+)
G418691 NA non-coding downstream 6012 1332334 ~ 1332597 (+)
G418667 NA non-coding downstream 38692 1365014 ~ 1365559 (+)
G418694 NA non-coding downstream 49639 1375961 ~ 1376294 (+)
G418701 NA non-coding downstream 56025 1382347 ~ 1382859 (+)
G418702 NA non-coding downstream 56692 1383014 ~ 1383342 (+)
G418116 NA other upstream 448708 872670 ~ 875249 (+)
G418059 NA other upstream 759506 558092 ~ 564451 (+)
G417987 NA other upstream 1096104 226703 ~ 227853 (+)
G418981 NA other downstream 766172 2092494 ~ 2093678 (+)
G420445 NA other downstream 2977014 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3846901 5173426 ~ 5176791 (+)
G421162 NA other downstream 4914911 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 6026327 7352621 ~ 7354396 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002567 MACIR coding NC_007121.7 CM002894.2 6765109 ~ 6775271 (-)