CI01000304_01392985_01399147 (CA9)


Basic Information

Item Value
gene id CI01000304_01392985_01399147
gene name CA9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1392985 ~ 1399153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01392985_01399147.mRNA
ATCAGGACGCATGGTCATCTGCATTTGAACACTGCAGTGGAAAGTCACAGTCTCCAATCGACATAAACACTCATAAGGTTTTCTATGACTCCAGACTTCCTTCGATTAAACTGGAGGGATATGATCTCACCGGCTCACCCACTCTTAAACTCATCAACAATGGACACACGTTACAACTGAGCCTGCCGAGCAGCATGCGTATCATGAGGGGATTTGATCATGTTTATGTCGCGGCCCAGCTTCACTTTCACTGGGGAACTACAGAAGTCCCTGGTTCAGAGCACACCATAGATAACGTACATTACCCTGCCGAGATCCACGTGGTTCATTATAACTCCAAATATGCAAATCTCACTGAGGCTGCTAGTAAAGCTGATGGATTGGCAGTGTTAGGAGGATTCATAGGTATTGGCCTGCATGAAAATGACAACTATGAAAAGATCTTGTCTGCTTTATCAGACATCAGCATAGAGGAGTCAAACACTGAGATTCCTGGTTTTAATGTGCGCCATCTTCTGCCAAACAGCCTGGAGAGGTTTTATAGGTACAATGGGTCCCTGACGACCCCTCCATGTTTTCAGACGGTCAGCTGGACTCTGTTCAATGACTCGATTAGAGTTTCAAGAAGACAGCTAGCGGCATTGGAGGACACGTTGAAAACCGAACACAACAAGCTTCTGTCCAAAAACTTCAGAGCACCACAACTTCTGCATGGGAGAAAAGTGCTGGCATCTTTCCACACAGTATCCACTATGGGAAAACCCAGAGAAGATCCAGAGCCTGAAACACAAGACAACAACGTAGTGAAAACTAGTGGAGGCGAATGGCACATTCTGGCCATTACGTTTGGCATTCTCTTCGCCATCACATTTCTGGTGTTCTCCATGTACACATATCGGCAGCAGAAGAAGTACTCAAAGTTTAAAAAAGACTCCAAGCAAAATGTTATTTATAAACCAGCTGCATTAGGAAAAGACATAGATCAAACCTCTGTTACTATAACATGAGCCACA

Function

symbol description
ca9 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; digestive system; eye; muscle; and renal system. Human ortholog(s) of this gene implicated in hepatitis B and renal cell carcinoma. Orthologous to human CA9 (carbonic anhydrase 9).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01392985_01399147.mRNA True 1013 mRNA 0.45 9 1392985 1399153

Neighbor

gene id symbol gene type direction distance location
CI01000304_01375020_01379551 NA coding upstream 13169 1374871 ~ 1379816 (+)
CI01000304_01369056_01372878 DCP2 coding upstream 20013 1368596 ~ 1372972 (+)
CI01000304_01366207_01367994 DCP2 coding upstream 24983 1366120 ~ 1368002 (+)
CI01000304_01337171_01361506 CHD1 coding upstream 31479 1337171 ~ 1361506 (+)
CI01000304_01323957_01324596 C16H5ORF30, CUNH5ORF30 coding upstream 66663 1323957 ~ 1326322 (+)
CI01000304_01681164_01706159 ANKRD55 coding downstream 282011 1681164 ~ 1706397 (+)
CI01000304_01718700_01722248 NA coding downstream 319175 1718328 ~ 1722276 (+)
CI01000304_01829156_01835147 ST8SIA4 coding downstream 430003 1829156 ~ 1835165 (+)
CI01000304_01877287_01890608 SYK coding downstream 476237 1875390 ~ 1890746 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 737099 2136252 ~ 2168463 (+)
G418702 NA non-coding upstream 9643 1383014 ~ 1383342 (+)
G418701 NA non-coding upstream 10126 1382347 ~ 1382859 (+)
G418694 NA non-coding upstream 16691 1375961 ~ 1376294 (+)
G418667 NA non-coding upstream 27426 1365014 ~ 1365559 (+)
G418691 NA non-coding upstream 60388 1332334 ~ 1332597 (+)
G418666 NA non-coding downstream 39625 1438778 ~ 1447835 (+)
G418675 NA non-coding downstream 79396 1478549 ~ 1486508 (+)
G418683 NA non-coding downstream 89402 1488555 ~ 1489020 (+)
G418671 NA non-coding downstream 122254 1521407 ~ 1560655 (+)
G418669 NA non-coding downstream 165752 1564905 ~ 1568257 (+)
G418116 NA other upstream 517736 872670 ~ 875249 (+)
G418059 NA other upstream 828534 558092 ~ 564451 (+)
G417987 NA other upstream 1165132 226703 ~ 227853 (+)
G418981 NA other downstream 693341 2092494 ~ 2093678 (+)
G420445 NA other downstream 2904183 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3774070 5173426 ~ 5176791 (+)
G421162 NA other downstream 4842080 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5953496 7352621 ~ 7354396 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location