CI01000304_01681164_01706159 (ANKRD55)


Basic Information

Item Value
gene id CI01000304_01681164_01706159
gene name ANKRD55
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1681164 ~ 1706397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01681164_01706159.mRNA
ATGGAGTTCAACTCTTCATCCGTATTTGAGCAGCACAAAGAAGCTGCTGAGGAGGTTGATCTGAATGTGGTGTACCAGGCGGCAGCAAACGGCGACGTCAACACGCTGACCGCCACCATACGAGAGGACCCGTCCATCCTGGAGTGCTGTGATGGGGAAGGCTCCACACCTCTGATGCATGCTGTGTCTGGGAGACAGGTGGATACTGTGAAATTGCTGCTGAAGATGGGAGCTTCTATCAACACACAAGATGCCTGTGGACGGACGTCCCTCTCTCTAGCGACATACCTTGGTTGGCTGGAAGGCTGTGTGTGTTTGCTTCGGAACGGGGCAAAACAGAACATTCCCGATAAGAATGGACGCTTGCCAATTCATGCTGCTACTGCTGAAACTGACTTCAGGCTCATGGCTGTGCTGCTACAGCAGTCAACACTGTGTGAAATCAATCATCAAGACAATGAGGGAATGACAGCTCTTCACTGGGCTTCTTTCCATAACCGACCAGAGCATGTGCAGGCCCTGCTGCAGAAAGGAGCTGACCCGACGCTTGTAGACAAAGACTTTAAAACAGCGCTTCATTGGGCTGTGCAGAGTGGCAGCCAGTTAATGTGTTCCCTCATTCTTGACCATAATCTGGGCTCCTCTGTGATCAATTATGATGATGAAAACGGGAAGACCTGCGTTCACATTGCCGCCGCTGCAGGTTTCAGTGACATCATCTATGAACTGTCTCGAATTCCTGAGACCAACTTGCAAGCTTTAGATGTGGATGAAAGGACCCCTCTTCACTGGGCCGCTGCAGCAGGTAAAGATGACTGTGTGCAGGTATTGTTGGAGCTGGGAGTGGAGCCCAACCCTCGAGATATTAACGAGAATACGCCCCTCACCTACGCCATGTACTGTGGTCATACTGCATGCATTAAACTCCTCTCCACTGAAAACAGGTCTGATTCAAGCAGGCCACCGCATGCTCAAAACAGTGACTCTTCTATACGCAAGGAGGGGAAATTTCGCATGCTGAATCACATCTTCTGCAAAAAGAAGAAGGAACTGCATCCTTCTCAGCAGATAGACTTGAGTCAAGATTGTCAGCTCAAAGAAGAGACGTCTGAGGTGGACGACATCATTACTATGTTCGACTGTGTTGTTGAACCGTTAGCCAGAGACGAGAGTGAAAACAGCTCTTCTGTCAGAAAACGAAATAATGCCTCTGAGAAAGCCCACCTCATTGAGGACACATCCAGCAAAGACTTCCTAAGTCTCCCACCCATACGCACACAGAGTCTTCCTCCAATCACTCTAGGTAAGTCTTTGCTGGCAAATTCTCAAACTTTGGCCCACAAGACCAGTGGAGGTCATGTGGTAGGACATTTAGCACACAGGTCACAGAAGAGCAAGAGCGAGCACGACCTGTTTGATGGTAAAAGTAAAGACCAAGCTTTTGGACATGCATGGAAGACTGAATCCAGTCAGATACTGACTCACAAAGCATGGATCTCAACTCCATCTGAACGGCTACTTGACAAGCTGCTGCATGGAACTTCAAGTCCTTTAGATGTGCTGTGCTCAAATCACTCACCATACATACAGAGAAATGACCAAGCTCAAAATCATCTTTTACCTCTGAGGGTTAGAGAAACTGCTCTCACACGCAACAGTCTTGCTCCAATCCGTGACCACTGCACTCACAGATTTTCCTTACCACCGGACCAGGTCTCCCAGGGAGTGAAGAAGTCAAAATCTTCTCTAGGAGCGAGTCTGTCTGTACTTCCACCTCCGTTTGCATCCAAACTGCATCGATCCGGCATTCCCCAAAGCCAGTCGCTCGGCTCCTTCCCGACTCCACTGACAGGAGAACCTTTACGGAACATTCAAGTTCTTCCAGCCATTCCGCCGCAAAGAAAACGCAGCCCATCTCCTCTCACGACCCAGAGGCCGCAGAATCACTCTGAGAGCAGAAACTGATGGAAATTTGCCTAAAATAAGCAACCAATTGAAAATTGTAATACTGTTCAGCTTTTCATGTGTCATTTGGATTTATTTCAATCACGAGGACACTGAAGTATCACTGTTTGATAAAATTACTGAGTCTTAACAGGCTATTTTTTCATACGATTTTACAACTGACCTTTTTCTATGGTATGCATATGGTTGAACTTTTAACTGTAAACACATGCTTTAAGCTTATTGTTTACTGTTATTA

Function

symbol description
ankrd55 Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Orthologous to human ANKRD55 (ankyrin repeat domain 55).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01681164_01706159.mRNA True 2203 mRNA 0.47 11 1681164 1706397

Neighbor

gene id symbol gene type direction distance location
CI01000304_01392985_01399147 CA9 coding upstream 282011 1392985 ~ 1399153 (+)
CI01000304_01375020_01379551 NA coding upstream 301348 1374871 ~ 1379816 (+)
CI01000304_01369056_01372878 DCP2 coding upstream 308192 1368596 ~ 1372972 (+)
CI01000304_01366207_01367994 DCP2 coding upstream 313162 1366120 ~ 1368002 (+)
CI01000304_01337171_01361506 CHD1 coding upstream 319658 1337171 ~ 1361506 (+)
CI01000304_01718700_01722248 NA coding downstream 11931 1718328 ~ 1722276 (+)
CI01000304_01829156_01835147 ST8SIA4 coding downstream 122759 1829156 ~ 1835165 (+)
CI01000304_01877287_01890608 SYK coding downstream 168993 1875390 ~ 1890746 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 429855 2136252 ~ 2168463 (+)
CI01000304_02206338_02219356 NA coding downstream 499941 2206338 ~ 2219642 (+)
G418751 NA non-coding upstream 111729 1569236 ~ 1569435 (+)
G418669 NA non-coding upstream 112907 1564905 ~ 1568257 (+)
G418671 NA non-coding upstream 120509 1521407 ~ 1560655 (+)
G418683 NA non-coding upstream 192144 1488555 ~ 1489020 (+)
G418675 NA non-coding upstream 194656 1478549 ~ 1486508 (+)
G418798 NA non-coding downstream 10130 1716527 ~ 1717649 (+)
G418790 NA non-coding downstream 64170 1770567 ~ 1809992 (+)
G418860 NA non-coding downstream 151770 1858167 ~ 1858452 (+)
G418861 NA non-coding downstream 153480 1859877 ~ 1860106 (+)
G418865 NA non-coding downstream 192759 1899156 ~ 1900776 (+)
G418116 NA other upstream 805915 872670 ~ 875249 (+)
G418059 NA other upstream 1116713 558092 ~ 564451 (+)
G417987 NA other upstream 1453311 226703 ~ 227853 (+)
G418981 NA other downstream 386097 2092494 ~ 2093678 (+)
G420445 NA other downstream 2596939 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3466826 5173426 ~ 5176791 (+)
G421162 NA other downstream 4534836 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5646252 7352621 ~ 7354396 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002551 ankrd55 coding NC_007121.7 CM002894.2 5823759 ~ 5847904 (-)