CI01000304_01829156_01835147 (ST8SIA4)


Basic Information

Item Value
gene id CI01000304_01829156_01835147
gene name ST8SIA4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1829156 ~ 1835165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_01829156_01835147.mRNA
ATGGAAAGGAAGGACATACTTCGCTTCTTGGACGCGGAGAAAGATGTGTCCGTTATCAAGAGCAGTTTTAAACCAGGCGATACCATCCGCTACGTTCTGGACAGACGCAGGACGTTCAATGTTTCCCATACGTTACACAGTTTGCTTCCTGAAGTCTCTCCTCTAAAGAACAAGATGTTCAAAACATGTGCTGTGGTGGGAAACTCTGGCATTCTCCTAAAGAGCGGATGTGGAAAGGAAATAGACAACCATGATTTTGTTATACGATGTAACCTCGCTCCCCTAAAGGATTTTGCAGATGATGTGGGTTTAAGGTCAGACTTCACCACTATGAACCCCTCTGTGATCCAGCGGGTGTACAAAGGTCTGCGGGATGAAACGGAGCAGGAGAACTTCATATTGCGTTTACAGCAGCTGAACAACAGCGTGCTCTGGATTCCTGCCTTCACAGTGAAGGGTAGCGAGAGGCATGTGGAAATTGTGAACGAGCTCATTCTTAAACACAAACTGAAAGTGCGCATGGCCTATCCTTCACTCCGGCTTATCCACGCTGTACGAAGGTACTGGCTTACAAATAAGATAAATATCAAACGACCCACTACTGGATTATTGATGTACACAATGGCTACACGCTTCTGTGATGAAATCTACCTGTATGGATTCTGGCCTTTTCCAAAAGATGCCAACGGAAATCCTGTTAAATATCATTACTATGACACACTGAAATATCGCTATTTTTCCAATGTGGGTCCCCACCGCATGCCACTGGAGTTTAATACACTGAAAAGTCTACACAACAAGGATGAAACAGTCCTGCTTAATGCTCTGAAATATTACAATCTTGTTTGGGTTGTGGTGGCAGGGCAAATCTTCTAAAAGAAAAAAGCCCACGTA

Function

symbol description
st8sia4 Enables sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including heart; liver; nervous system; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA4 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K06614 SIAT8D; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_01829156_01835147.mRNA True 894 mRNA 0.44 5 1829156 1835165

Neighbor

gene id symbol gene type direction distance location
CI01000304_01718700_01722248 NA coding upstream 106880 1718328 ~ 1722276 (+)
CI01000304_01681164_01706159 ANKRD55 coding upstream 122759 1681164 ~ 1706397 (+)
CI01000304_01392985_01399147 CA9 coding upstream 430003 1392985 ~ 1399153 (+)
CI01000304_01375020_01379551 NA coding upstream 449340 1374871 ~ 1379816 (+)
CI01000304_01369056_01372878 DCP2 coding upstream 456184 1368596 ~ 1372972 (+)
CI01000304_01877287_01890608 SYK coding downstream 40225 1875390 ~ 1890746 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 301087 2136252 ~ 2168463 (+)
CI01000304_02206338_02219356 NA coding downstream 371173 2206338 ~ 2219642 (+)
CI01000304_02229520_02235812 HNRNPDL coding downstream 393974 2229139 ~ 2236204 (+)
CI01000304_02236583_02240921 HNRNPD coding downstream 401202 2236367 ~ 2241608 (+)
G418790 NA non-coding upstream 19164 1770567 ~ 1809992 (+)
G418799 NA non-coding upstream 88524 1678791 ~ 1740632 (+)
G418798 NA non-coding upstream 111507 1716527 ~ 1717649 (+)
G418751 NA non-coding upstream 259721 1569236 ~ 1569435 (+)
G418669 NA non-coding upstream 260899 1564905 ~ 1568257 (+)
G418860 NA non-coding downstream 23002 1858167 ~ 1858452 (+)
G418861 NA non-coding downstream 24712 1859877 ~ 1860106 (+)
G418865 NA non-coding downstream 63991 1899156 ~ 1900776 (+)
G418872 NA non-coding downstream 73954 1909119 ~ 1909325 (+)
G418883 NA non-coding downstream 88749 1923914 ~ 1924175 (+)
G418116 NA other upstream 953907 872670 ~ 875249 (+)
G418059 NA other upstream 1264705 558092 ~ 564451 (+)
G417987 NA other upstream 1601303 226703 ~ 227853 (+)
G418981 NA other downstream 257329 2092494 ~ 2093678 (+)
G420445 NA other downstream 2468171 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3338058 5173426 ~ 5176791 (+)
G421162 NA other downstream 4406068 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5517484 7352621 ~ 7354396 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002549 st8sia4 coding NC_007121.7 CM002894.2 5667401 ~ 5684326 (-)