CI01000304_02229520_02235812 (HNRNPDL)


Basic Information

Item Value
gene id CI01000304_02229520_02235812
gene name HNRNPDL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2229139 ~ 2236204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_02229520_02235812.mRNA
TTATAAAAAGAACATTGTGGTTATATCTCTTATTTATACATATAAATATCTGTAGAAAAAAATAAAAATTATTTCAAAGTGTACTAAATATGTAATTATGTATTACAATATCTACTGTTATATCTATAATATCTACTATGTATGTTGTTTCATAAGGTTGTTTTCATAGATATTCCCCATAGATAAGCATTTGCAACTATTAACATAAGCCCCGCCCACTCCCCCCTTCCTCGTGCAGACGGATGGATTTCGTCACTGATCTCAGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGGAGTCTTTGACCTTTTAAAACCGCTGTAATATATACTATTATATAGTTAGTGTCGGATCAAACTACACGTACTCCAAAATGCAGGCCGAAGAACAAGGTGACTTCAGCACTGACGAGTTTCCAGAAGGCTCCAAAATAAACGCGAGTAAAAACCAGGAGGATGACGGGAAAATGTTCATCGGTGGGCTCAGTTGGGACACCAGCAAGAAAGACCTTACTGACTACCTGTCCAAGTTTGGAGAAGTCCTGGACTGCACCATCAAAACAGACCCCATGACCGGCCGCTCCAGGGGCTTTGGTTTCGTGCTCTTCAGAGATGCTGAGAGTGTTGATAAGGTGTTAGAGCTGAAGGAGCACAAGCTGGATGGCAAATTGATTGATCCCAAGAGAGCCAAAGCAATTAAGGGCAAGGAACCCCCCAAGAAGGTTTTTGTCGGAGGTCTAAGTCCAGACACAACTGAGGAACAGATCCGGGAATACTTTGGAGCTTATGGGGATATTGAAAGCATTGAGCTTCCCATGGACACCAAAACAAACGAGAGGCGGGGATTCTGCTTTGTGACATACGTTTTAGAGGATCCAGTTCAGAAACTGCTGGAGAACAGATACCATCAAATTGGATCAGGGAAGGACAGGGCCAAGGCTATAATCAAGGATACAACAGCTACTATGGCCAGAACTATGGAGGCTACGGCAACGGATACAACCAGGGCTATAATGGCTATTCTGGCTATGACTATTCAGGATACAACTATCCAAATTATGGCTATGGACAAGGCTATGATGATTACAATGGTCAACAGAGCAGTTATGGCAAGGCCTCACGAGAGGGCGGAAACCATCAGAACAGCTACCAGCCGTATTGATGAAGTGGCTAAACACATTCATATAAATGGTCGGCAGGCTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGGAATCCTGTCCTTAAACAACTATTAAAAATGTTATTCGGTCCTCTGGGGACAAATTCAGTGTCTGACCTTGTAAATAGCGAGACGTTTTGTTTCCAAGTTTGTCTTATTCTGTGCTTTGTTCAGACCGAACCTGTAGGTTTTGTGCTGTGTTCTTAAGTCTTGATTAGGAAAAGTGTCCTTTATTTTGTATTTTAGTTCTTTTCCTTAAGTTTTTTGGATAAAGGGATTAAAAAAATGGGAAAAAATTTTGTTGTGCTGTTTTCATTTTCTGAGTTATACACTGCCTCTGCATGCAGACTTTAACTGGAGTTGTAATACATGTGTTATATAAAAAATATATTAACTTATTTGCACGTTGTTGGGGATGTACAGACTAATTAAATGATATACATACAAGAGGTTTATA

Function

symbol description
hnrnpdl Predicted to enable poly(A) binding activity and poly(G) binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

GO: NA

KEGG:

id description
K13044 HNRNPABD; heterogeneous nuclear ribonucleoprotein A/B/D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_02229520_02235812.mRNA True 1649 mRNA 0.41 7 2229139 2236204

Neighbor

gene id symbol gene type direction distance location
CI01000304_02206338_02219356 NA coding upstream 9497 2206338 ~ 2219642 (+)
CI01000304_02136252_02167869 SEC31A coding upstream 60676 2136252 ~ 2168463 (+)
CI01000304_01877287_01890608 SYK coding upstream 338393 1875390 ~ 1890746 (+)
CI01000304_01829156_01835147 ST8SIA4 coding upstream 393974 1829156 ~ 1835165 (+)
CI01000304_01718700_01722248 NA coding upstream 506863 1718328 ~ 1722276 (+)
CI01000304_02236583_02240921 HNRNPD coding downstream 163 2236367 ~ 2241608 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding downstream 17690 2253894 ~ 2264078 (+)
CI01000304_02267341_02290220 SNX30, SNX30.S coding downstream 31137 2267341 ~ 2290283 (+)
CI01000304_02558750_02584199 NA coding downstream 322546 2558750 ~ 2585195 (+)
CI01000304_02672677_02672967 NA coding downstream 436416 2672620 ~ 2673448 (+)
G419006 NA non-coding upstream 291 2228641 ~ 2228848 (+)
G419001 NA non-coding upstream 41720 2186731 ~ 2187419 (+)
G418998 NA non-coding upstream 44346 2180561 ~ 2184793 (+)
G418980 NA non-coding upstream 142611 2086310 ~ 2086528 (+)
G418909 NA non-coding upstream 162276 2059352 ~ 2066863 (+)
G419019 NA non-coding downstream 29562 2265766 ~ 2327739 (+)
G419081 NA non-coding downstream 187169 2423373 ~ 2423578 (+)
G419082 NA non-coding downstream 187773 2423977 ~ 2424792 (+)
G419083 NA non-coding downstream 188856 2425060 ~ 2425412 (+)
G418981 NA other upstream 135461 2092494 ~ 2093678 (+)
G418116 NA other upstream 1353890 872670 ~ 875249 (+)
G418059 NA other upstream 1664688 558092 ~ 564451 (+)
G417987 NA other upstream 2001286 226703 ~ 227853 (+)
G420445 NA other downstream 2067132 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 2937019 5173426 ~ 5176791 (+)
G421162 NA other downstream 4005029 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5116445 7352621 ~ 7354396 (+)
G421435 NA other downstream 5247937 7484141 ~ 7484688 (+)

Expression


Co-expression Network