CI01000304_02254859_02262580 (MAT2AL, METK1)


Basic Information

Item Value
gene id CI01000304_02254859_02262580
gene name MAT2AL, METK1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2253894 ~ 2264078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_02254859_02262580.mRNA
GTATAAATTGCACTTCTATAGTGACGTGACGCACCGTGTTTTTTCAGGTGCCACGTAGACGCTTTTTTAATGCGCGTATGGCAGTGGTTATACATTAAAGCGGCATATACTTGTGATATTTTTCCCTTTTACGAGAGTAAATATCTTCCTCTACCTCCACGGCGCGCTGAGGCTCATAAAGCCGAATCCTCTATTAAGATGCATTCTAATCTTCAGGACGTTATCGGTCTTATTTAAGACATTTATTGACTAAAAACTGAAATTACGTCTTAAATCTCTTTATTCCAATGATTGGTACATGACATACAAATAGAAATATGCTTTAGAAACCTTTATAAAATGATAAAATAACTCCATATCCTGTAATCACAAACGACTGTGATTGGTCTAATCTGATCAGCGCTGAGAAAAGTAACAGAAAAAATGTGACAACACTGTTTCTCTACCACTCCTTGAAAAAAAATGACCACAGAATCGAAAACACACTATAAAGAGTTAAAACAGCACAGTTATTTATTTACAAACATTAACCCTCAATTAGAGATAATGTCAGGGCAGCTAACACATCCCATTTTCTGACTGTTCACTACAAATGGCACTAACCGCTTGCGAGGTCTACGAGTGAATTTCAGGGGAGAATCACTATTTGCTTCCTCTACCGGCCGCTTTAAGAACATCAAGCCTCAAGTCAGCACGAAGTTCCCGCTGATAACTCGTCAGACCGTTTTTAATTCACTCTCATTTGGAATGAGCACGCTTTTTATAGCCAGGACAACGGTTTATGGTCGTCTATATTTATATCCTTGGATGTCAGAAGTCGCGTGTGATTGGTTGAAGTAAAAACTAACTCTAAAGCCACTCCCATTAAAGTTCTTCAAACTTTAGACTGGCTGTGAACATTACACTAGACGGTTTTGTAGTAGTTGCAGTTATAAAGCGGTAGTTTTGTCAAGTCTGCATTCATCATGAATCCTTTTGGTAGTAAGAAATCAGGAAAAACTTTCCTTTTCACATCTGAGTCTGTAGGAGAAGGACATTCTGATAAAATGTGTGACCAGATTAGTGATGCTGTTCTGGACGCTTACCTGACACAGGACCCGGACTCCAAAGTGGCTTGTGAGTGTGTGTCCAAGACTGGTATGATCCTTTTGTGTGGTGAAGTGACTTCAAAGGCTGTCGTGGATCTTCAGAAAGTGGTTAGAGACACTGTCAAGAATATTGGATATGACGACTCATCTAAGGGTTTTGACTATAAGACGTGCAATGTGCTGGTGTCACTGCAGCCTCAGTGTGCTGAGATCAGTGACTGTGTGTTTGAAGGCCGAGACATGGAGGACATCGGCGCTGGTGATCAGGGTTTAATGTTTGGCTATGCCACTGATGAAACAGAGGAGTGTATGCCACTCACCATCCTACTAGCTCACAGACTCAATGCCAAATTGAAGGAACTTTCAAAGACCGGAGTTTGTCCTTGGATTCTTCCAGATTCAAAAACACAGGTGACTGTGGAGTATCGTGACGACATGGGTGCCATGGAGCCTGTTCGTGTTCATACCTTGGTCATCTCAGTTCAGCACAGTCCTGACATCACGCTGGAAGATATTCGTAACAATCTGATGGAGAAAGTTGTAAAGACGGTCATCCCTGCCAAATATCTGGATGACAAGACAATTTATCACCTGCTGCCTAGTGGGAAGTTCCTTTTAGGTGGTCCACAAGGAGATGCTGGTCTCACTGGCAGAAAGATCATTGTGGACACCTATGGTGGATGGGGTGGCCATGGCGGTGGAGCCTTCTCTGGTAAAGATTACTCCAAAGTAGATCGATCGGGTGCTTATGCTGCCCGGTGGGTGGCCAAGTCACTCGTCAAAGCCAAACTGTGTCGGAGAGTTCTGGTTCAGATCTCGTATGCTATTGGTATTAGTCACCCTTTGTCAGTGTCTGTCTTTCATTACGGCACATCAACGAGAGATGAGGACGAGCTTTTAGAGATCGTCAAGAAAAACTTTGACCTGAGGCCAGGGGTCATTGTCAAGGAGCTTGATCTGAAGAAACCGATCTACCAGAAAACAGCCTGCTATGGACACTTTGGACGAGAGGAATTTCCTTGGGAAAAGCCGAAGAAACTCATCTTCTGATATTCTGTGACACAAAGAATTAGAATTGCCTCTACATTCCTTGCAATTTTGAACGATTATGATAGTATTTGCGCTAAATGCTTTACTGTGATCAAGACTTTATAAATTGTTTAATTTATAGACATGTTTTCATATTCTAGACAGTAAATTAGAATGGAGCATGTTTAATATGAATTAATAGAATTCAGTTAGTTAATGAATTATGTGGAAAATGTGATTTTTTTTATATTATTACATCTTGTGGATCATATAATAACTGTGATGACTGTGAAGGGGTGAAACCCCTTTTAATGGTACCTTATTAGTTATTACATAATTGTCCTTTTTTCATGTATACCAAGTCAATTGTCAATTAATAACACTTCTTTCATGTTTACCAGCACTAGTGTCTACTCATTTTAAAGAGTATTCAAAATATATTACCACTTATTTATTAGGTTTTACTTAAAATGTAGTGTATATCTGTCCTGTACCCAAAAAAGAACTGCAATTATGTTGAAAGAGACATTTTTTACAATTTATTCAACACTCAGCCAAACAAATACTATTTACAATATGGCAATTCATAGCATTTAATTCAACACAATCACATCAGCTTTGAACCAACATATAAGTTATTATAGTTATGTTATTATGGCATCTGTGTGATATTCCAGTGGAAATGAAGAATGAATGATTGCTTCCTTGTCCTATATCAGAGACGTGCCTTGGTCTGTCGCATATGAAAAACACTGAAGAAAAGTGATTGGTTTCAGTGGGAGTAAATCAGGATCATGTCTTTTTCCTGGGTGAATCACAGTACGGCACATTTTCCAGCAGGAGACTCTTGCGGGGCCGCAACACTACAAAATATAAGCAACGATTTTTAGCCCAAGGAAATAATGATTTGAATGTCAAAATTATGATGCATTTTAAAAAACTCAAGATGTTTAGTCATATTTCAACCTCAAATTAAAATGACATTCTTATTACTCCAATGGAAAAAAAGAGATTTATGATATAACATAAAATCAACTTGTTATGCATTTCTAAAATACGTATACAATTTAAATCATAAAGTATACATGGGTAGTATTTGTTGTACTGTCTGAATTTATGTGGATATAAAATCACTTCTTTAATACGGTAATGACTCAATAATCAGAAAAACTATTTTGGGAGGATTATTATGCTTAAATTTCATGGAAATACCATCATGCAAGAAATGCTAACTGGATAAAAACATACAAAACTTTGTCTGTATGTCGGTGTGAAATGTGACCTGAACATGTTTTTGAGATTCACCCATTATGTCACACAAATCACTTACAGATTTTATTTTCCTCCACATGCTCAACCTGTATCACACTTTCACGAAGGATGGTCTCAACTGATCGGGCCATTTTAAGCATCTGAGAAGAAAAAGCATATTAAATATAAAGCTTTGTGATTCTTGCCTTGATCTCTAAGCCTCAGAGTCAGAAGTGACAGTTTCATATCTTTAATATCTATCAATGAA
>TU481340
GCATATACTTGTGATATTTTTCCCTTTTACGAGAGTAAATATCTTCCTCTACCTCCACGGCGCGCTGAGGCTCATAAAGCCGAATCCTCTATTAAGATGCATTCTAATCTTCAGGACGTTATCGGTCTTATTTAAGACATTTATTGACTAAAAACTGAAATTACGTCTTAAATCTCTTTATTCCAATGATTGGTACATGACATACAAATAGAAAT

Function

symbol description
mat2al Predicted to enable methionine adenosyltransferase activity. Predicted to be involved in S-adenosylmethionine biosynthetic process. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in anterior neural tube and optic cup. Orthologous to human MAT2A (methionine adenosyltransferase 2A).

GO:

id name namespace
GO:0004478 methionine adenosyltransferase activity molecular_function

KEGG:

id description
K00789 metK; S-adenosylmethionine synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_02254859_02262580.mRNA False 3636 mRNA 0.38 9 2253894 2264078
TU481340 True 215 lncRNA 0.35 1 2253996 2254210

Neighbor

gene id symbol gene type direction distance location
CI01000304_02236583_02240921 HNRNPD coding upstream 12286 2236367 ~ 2241608 (+)
CI01000304_02229520_02235812 HNRNPDL coding upstream 17690 2229139 ~ 2236204 (+)
CI01000304_02206338_02219356 NA coding upstream 34252 2206338 ~ 2219642 (+)
CI01000304_02136252_02167869 SEC31A coding upstream 85431 2136252 ~ 2168463 (+)
CI01000304_01877287_01890608 SYK coding upstream 363148 1875390 ~ 1890746 (+)
CI01000304_02267341_02290220 SNX30, SNX30.S coding downstream 3263 2267341 ~ 2290283 (+)
CI01000304_02558750_02584199 NA coding downstream 294672 2558750 ~ 2585195 (+)
CI01000304_02672677_02672967 NA coding downstream 408542 2672620 ~ 2673448 (+)
CI01000304_02810127_02814735 NA coding downstream 546049 2810127 ~ 2815076 (+)
CI01000304_02993734_03052509 EPHA5 coding downstream 729656 2993734 ~ 3054991 (+)
G419006 NA non-coding upstream 25046 2228641 ~ 2228848 (+)
G419001 NA non-coding upstream 66475 2186731 ~ 2187419 (+)
G418998 NA non-coding upstream 69101 2180561 ~ 2184793 (+)
G418980 NA non-coding upstream 167366 2086310 ~ 2086528 (+)
G418909 NA non-coding upstream 187031 2059352 ~ 2066863 (+)
G419019 NA non-coding downstream 1688 2265766 ~ 2327739 (+)
G419081 NA non-coding downstream 159295 2423373 ~ 2423578 (+)
G419082 NA non-coding downstream 159899 2423977 ~ 2424792 (+)
G419083 NA non-coding downstream 160982 2425060 ~ 2425412 (+)
G419089 NA non-coding downstream 169886 2433964 ~ 2434172 (+)
G418981 NA other upstream 160216 2092494 ~ 2093678 (+)
G418116 NA other upstream 1378645 872670 ~ 875249 (+)
G418059 NA other upstream 1689443 558092 ~ 564451 (+)
G417987 NA other upstream 2026041 226703 ~ 227853 (+)
G420445 NA other downstream 2039258 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 2909145 5173426 ~ 5176791 (+)
G421162 NA other downstream 3977155 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5088571 7352621 ~ 7354396 (+)
G421435 NA other downstream 5220063 7484141 ~ 7484688 (+)

Expression


Co-expression Network