CI01000304_02558750_02584199


Basic Information

Item Value
gene id CI01000304_02558750_02584199
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2558750 ~ 2585195 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_02558750_02584199.mRNA
TTGGTCATCATGGCCGGGACGGTGCTGCTGGCATACTACTTTGAATGCACAGACACGTTTGGGATCCATATCCAGGGTTTCTTCTGTAATGACGCTGACCTGATGAAGCCCTACCCCGGGCCGGAGGAGAGCAGCTTCATCCCTCCTCTCATCCTGTACTGCGTGGTAGCAGCTGCGCCCACTGCCATTGCTTTCAACGTTCATAGAAAACAGTCTTTCACCCTGGTTCAATTTCAAATTCTTCACCTTACCCAGAAAGTTTTTATCCGAGGTATCTTGTCAGCATTAGGGAATGTAGCCTGCGCCGCCCCTATCATGGAAGTATGGTTTCGGTTGTTCATACCAAAGTATAAAATATATTTGAAACTTCTGGACTCACCGGTGTCTTGTGTTTTAATATCCTGTGGGCGTGTGCCAGCTGTAACTGACTACCTGAACTCTATTGTGCTTAACGGTGTCTTCGCATTTGGCTTGTTTGCCACCGACATCTTTGTCAACGCCGGCCAGATAGTGACTGGCAATCTGGCGCCATACTTCCTGAGCGTCTGCAAGCCAAATTACACTGGGATGGATTGTCACTTCAGCCATCAGTTCATCGCCAATGGAAACATCTGCACTGGGAACCAGGTGGTGGTGGAGAGAGCCAGGAGGTCTTTCCCATCCAAAGATGCTTCGCTCAGTGTCTACTCTGCTGTCTACGTTACTATGTACATCACGAGCACCATCAAGACGAAAAGCAGTCGCCTGGCCAAGCCTGTACTTTGTCTGGGAATCCTGTGCGCTGCTTTCCTTACCGGCCTGAACCGGGTATCAGAATACCGCAATCATTGCTCTGACGTTATTGCTGGCTTCATATTAGGAAGCTCCGTAGCTCTTTTTCTGGGAATCTGTGTAGTGAACAACTTCAAAGGGACCCACTCCACTCCTACCAAACAGAAACAGGAGGATTACCGCGGTCTTCCCTTGATGACATTCCCCCGTGTGGAAAGCCCTCTGGAGACTCTCAGCGCACAGACTCATTTTATCACCTTATACAGCGGGGAGATCCAATGCTGCTTCATTTCGACACTGTTTGCAGCAGGGAAAATCTTGTCAGACAACTCTATTGACAGCCAGCCAGTAAAATGCCTCGAGCGCCTGAGCAACAGATGTCGGTCAGAGTAATCCCCCTTTGCTTTGGACATCCGCTTAACACCCTAGTGCAATTTAGAGCTGGCTACGCAAGTCATTGTGTTTGGGAAACAAGGAAAATCAGGTGTTCTGTCACGATCTGGACAAGTACAATAATCGAAACGGTTGATTCAACGGGAATTGGCACCGAAAAATTACACATTCTGCTCCGTGGCTCTCTGGAGTTTCCGTTAAATGCACCTGACTGGTAATAAGCATTTAAGTGACAAGTCAAATGCTTATTACCGTCTGGAATGGCACAGCATGACTCTGAATCCAATTTTGTTTGTCTTTCAGAACCATTCGGCATCCATGACTGAAGTCACATGACTAAGGGGGCAGCACAGAGTCACTTTCGCTTCACCTCAACACTTCTAGGCACAAAAAGTTTTTTGTACTGTGGCATACTGTAAAAAAAAGAAGAAGAAAAAAGACAGTATTATGTTGTAACTAGTTGTACCTAGAAGCAGCTGTTTTGTACATTTTGTATAAGAGAGTGCTGTAGCTTTTCCTCATAATGTCAACACTACTCAATTCATGTCCAGATTTCTGCCTTCTTTGTCATATTTTACATCACAAAGTAAATATATACAGTCTATATATAATGTAATTCAAATATCGATGTTGTTATGTGGTATTTGTACAAAGAATGATTTTATTTAGATTTTTTTCCTGTACATTTTTGGACAAAGATCATTTTGTATTCTTTTTGTTATCTGTATAAAGCATTTTGATCAACTTTGCCTGCTGATTTTCCAGGAATGTTTTTGGTATACCTATTTTTTTGGTGTAAGATTTAAAGAAAACATGTTGAATTGTTACACGTCGTTGTATCTGATTCTCCTCGGGCATCTTTGAATGGCCATGTACTCAGCATGTAATACACAACACTGTTTGAATAACCTGTTATTCCCGACTTGTGTTTTGTTTTTCTTTAAAGTTTGCGTTTCATTTGAAATGCTGAATATATTTTCCTGAGTAGTCTGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_02558750_02584199.mRNA True 2160 mRNA 0.43 7 2558750 2585195

Neighbor

gene id symbol gene type direction distance location
CI01000304_02267341_02290220 SNX30, SNX30.S coding upstream 268467 2267341 ~ 2290283 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding upstream 294672 2253894 ~ 2264078 (+)
CI01000304_02236583_02240921 HNRNPD coding upstream 317142 2236367 ~ 2241608 (+)
CI01000304_02229520_02235812 HNRNPDL coding upstream 322546 2229139 ~ 2236204 (+)
CI01000304_02206338_02219356 NA coding upstream 339108 2206338 ~ 2219642 (+)
CI01000304_02672677_02672967 NA coding downstream 87425 2672620 ~ 2673448 (+)
CI01000304_02810127_02814735 NA coding downstream 224932 2810127 ~ 2815076 (+)
CI01000304_02993734_03052509 EPHA5 coding downstream 408539 2993734 ~ 3054991 (+)
CI01000304_03127839_03154603 NA coding downstream 541398 3126593 ~ 3154797 (+)
CI01000304_03193646_03207372 LPAR1 coding downstream 608193 3193388 ~ 3208382 (+)
G419115 NA non-coding upstream 7993 2538432 ~ 2550757 (+)
G419116 NA non-coding upstream 11542 2487777 ~ 2547208 (+)
G419114 NA non-coding upstream 73450 2484922 ~ 2485300 (+)
G419113 NA non-coding upstream 74148 2484332 ~ 2484602 (+)
G419092 NA non-coding upstream 118575 2439961 ~ 2440175 (+)
G419162 NA non-coding downstream 73928 2659123 ~ 2659415 (+)
G419542 NA non-coding downstream 100615 2685810 ~ 2690848 (+)
G419635 NA non-coding downstream 214359 2799554 ~ 2799821 (+)
G419636 NA non-coding downstream 215223 2800418 ~ 2800636 (+)
G419647 NA non-coding downstream 233746 2818941 ~ 2819261 (+)
G418981 NA other upstream 465072 2092494 ~ 2093678 (+)
G418116 NA other upstream 1683501 872670 ~ 875249 (+)
G418059 NA other upstream 1994299 558092 ~ 564451 (+)
G417987 NA other upstream 2330897 226703 ~ 227853 (+)
G420445 NA other downstream 1718141 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 2588028 5173426 ~ 5176791 (+)
G421162 NA other downstream 3656038 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 4767454 7352621 ~ 7354396 (+)
G421435 NA other downstream 4898946 7484141 ~ 7484688 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001838 plppr1 coding NC_007121.7 CM002894.2 4235998 ~ 4259274 (+)
bowfin (Amia calva) AMCG00010377 NA coding CM030129.1 CM030129.1 26735297 ~ 26735518 (+)