CI01000304_02672677_02672967


Basic Information

Item Value
gene id CI01000304_02672677_02672967
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2672620 ~ 2673448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_02672677_02672967.mRNA
CTATATCAGCAGACAATAAGAGATGCATATGTGTTACCAAAACTGGAGGACACTTTCATGGCTTTAACTGGATCAAAGTGGTTCTCAGTTCTGGTCCTAAAGTCTGGATACTACCAAATTGAGGTTGAGGAGAAGGACAAAGCAAAGACCGCCCTTGTGTTCCCTTTGGGGTTTTACAAATTTAATCATATGCCGCAGGGAGTGACTAATGCTCCAAGTACTTTTCAACGAATAATGGAGAAATGCATGACTGACATAAATCTCGAAGAGATCCTTGTATTCATTGATGACATCATTGTTTTCTCCAAGCACTTAGAAGAGCACAAGGAAAGATTGATGAGTTCTTAACAGGCTCAAGGACTAAAACTAGCCCCAGAGAAGTTTTTTTGCGCAATCCTCAGTAAAGTACTGAAATAAGGTAGCTGCTGTAAAAACCTGGCCAATCAAAAAAAAAAAAAAAAAAAAAATTAAAGGAATTAAAATCTTTCCTTGTTCATTGGTTACTATCATCGATTCATCAAGGACTTTTCCAAGAAGATCAGACCCCTCAATTAATTGACTTCTGGGTATCCACCTACCCGAAAGAATTTGAAGTCAAAGCATGATACCAGATATTACAACCCAGAAGAGTCCTTCAGTGGAAGGTGGACCACCTCTTGCCAGGAAGCATTTGATCTAATCATTAAGGAACTGAAAGATGAAAGTGTTAGGCAGAAACATCCTAATATGGAGAAAACAGACGTCAAAACAACACAACTCAAACTAAATAGGAAGATTTGAAGGGTTTATTTCCTCAAAAAGATTTAGATGTTTATTGTCAAAGTATAAA

Function

NR:

description
Retrovirus polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_02672677_02672967.mRNA True 829 mRNA 0.37 1 2672620 2673448

Neighbor

gene id symbol gene type direction distance location
CI01000304_02558750_02584199 NA coding upstream 87425 2558750 ~ 2585195 (+)
CI01000304_02267341_02290220 SNX30, SNX30.S coding upstream 382337 2267341 ~ 2290283 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding upstream 408542 2253894 ~ 2264078 (+)
CI01000304_02236583_02240921 HNRNPD coding upstream 431012 2236367 ~ 2241608 (+)
CI01000304_02229520_02235812 HNRNPDL coding upstream 436416 2229139 ~ 2236204 (+)
CI01000304_02810127_02814735 NA coding downstream 136679 2810127 ~ 2815076 (+)
CI01000304_02993734_03052509 EPHA5 coding downstream 320286 2993734 ~ 3054991 (+)
CI01000304_03127839_03154603 NA coding downstream 453145 3126593 ~ 3154797 (+)
CI01000304_03193646_03207372 LPAR1 coding downstream 519940 3193388 ~ 3208382 (+)
CI01000304_03261474_03267659 RASSF6 coding downstream 588026 3261474 ~ 3268074 (+)
G419162 NA non-coding upstream 13205 2659123 ~ 2659415 (+)
G419115 NA non-coding upstream 121863 2538432 ~ 2550757 (+)
G419116 NA non-coding upstream 125412 2487777 ~ 2547208 (+)
G419114 NA non-coding upstream 187320 2484922 ~ 2485300 (+)
G419113 NA non-coding upstream 188018 2484332 ~ 2484602 (+)
G419542 NA non-coding downstream 12362 2685810 ~ 2690848 (+)
G419635 NA non-coding downstream 126106 2799554 ~ 2799821 (+)
G419636 NA non-coding downstream 126970 2800418 ~ 2800636 (+)
G419647 NA non-coding downstream 145493 2818941 ~ 2819261 (+)
G419724 NA non-coding downstream 268248 2941696 ~ 2941950 (+)
G418981 NA other upstream 578942 2092494 ~ 2093678 (+)
G418116 NA other upstream 1797371 872670 ~ 875249 (+)
G418059 NA other upstream 2108169 558092 ~ 564451 (+)
G417987 NA other upstream 2444767 226703 ~ 227853 (+)
G420445 NA other downstream 1629888 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 2499775 5173426 ~ 5176791 (+)
G421162 NA other downstream 3567785 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 4679201 7352621 ~ 7354396 (+)
G421435 NA other downstream 4810693 7484141 ~ 7484688 (+)

Expression


Co-expression Network