CI01000304_02993734_03052509 (EPHA5)


Basic Information

Item Value
gene id CI01000304_02993734_03052509
gene name EPHA5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2993734 ~ 3054991 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_02993734_03052509.mRNA
TGGGAAGAAATCGGAGAGGTGGACGAGAACTATGCACCCATTCACACGTACCAGGTGTGTAAAGTGATGGAGCACAATCAGAACAACTGGTTGCAGACGAACTGGATATTAACCCAAGGTGCCCAGCGAGTGTTTGTGGAGCTCAAGTTCACTCTACGGGACTGCAACAGTCTCCCTGGAGGTCTGGGCACGTGCAAGGAGACTTTCAATGTCTACTATTATGAAACCAACGACGAGGAGAGAAGGAATATTCGGGAAAGCCAGTATACAAAAATCGACACCATCGCGGCTGACGAGAGCTTTACAGAGCTTGATCTCGGAGACAGGGTCATGAAGCTAAACACGGAAGTTAGGGATGTGGGTCCGTTGACCAAGAAAGGCTTCTACCTGGCTTTCCAAGACCTAGGCGCATGTATCGCTCTCGTGTCCGTCCGTGTCTTCTACAAAAAGTGTCCTTTTGTTGTCAGGAATTTGGCCCTCTTCCCGGATACTATAACCGGGGCAGATTCCTCCCAGCTTCTGGAGGTGCCAGGGACCTGCGTCAACAACTCGGTGGCTGATGAACTTCCCAGAATGCATTGCAGTGCCGAGGGGGAGTGGCTGGTGCCCATTGGGAGGTGCATGTGCCAGGCAGGCCATGAGGAAGTTAATGGCTCCTGTCAAGTGTGTAAGCCAGGCTTTTACCGATCAGCTCTTCAGACCAAAAGCTGCAGTAAATGTCCTCCCAGAAGTTTCACCAAGGTGGAGGCTTCCACCTCCTGTCAATGTGAGCAGGGATACTACAGGACCGAATCGGACCCCGCCAATATGGCCTGCACAAAGCCCCCTTCCGCCCCACGAAATGCCATCTCCAACGTGAATGAGACCAGCGTCTTCTTGGAGTGGAGTGCCCCCGAAGAAACAGGAGGCCGGAAAGACGTTAGATACAATATCCAGTGCAGTAAGATCAGTACAGATTTGGGCAACTACGAACCTTGTGGAAGCCATGTACGATTCCTCCCACAGCGGATGGGTCTAAGAAACACCTCCGTCATGGTCGTGGATCTCCTGGCTCACACCAACTACACCTTTGAGGTGGAGGCTGTGAATGGGGTGTCAGAACTAACTGCCCCTTTGCGCCAGTACGTCTCACTCAATGTCACCACCAACCAAGCCGCTCCATCTCCTATAACCGTGGTGAAGAAAGGCAAGACAGCGAAGAATAGCATCACAGTGTCCTGGCAAGAACCTGACCGACCCAACGGCATCATACTTGAGTATGAGATCAAGTATTTTGAGAAGGATCAGGAAACAAGCTACACCATCATAAAGTCAAAGGAGACAGATGTTTTGGTTGATGGCCTTAAACCTTCTTCAGCATACATCTTTCAAATCAGAGCACGCACCTCTGCAGGCTACGGAGGCTTTAGTCGCCGCTTTGAGTTTGAAACCAGCCCTTACTTAGCGGCCTCCAGTGAGCAGGGTCAGGTGCCCATCATTGCTGTAGCTGTTACTGTGGGCATCATCCTCATTGCACTGGTCACAGGTTTCCTGATGAGTGGCAGACGTTGTGGCTACAGCAAAGCTAAGCAGGATCCAGATGAGGAGAAGATGCACTTTCACAATGGTCACATCAAATTCCCAGCGGTCCGCACATATATCGATCCCCACACTTACGAAGATCCCAACCAGGCTGTCCATGAGTTTGCCAAGGAGATTGATGTCTCCTGTATCACCATTGAGCGGGTTATTGGAGCTGGTGAGTTCGGTGAGGTGTGTAGCGGTTTGCTGCGGCTGCCAGGGAAGAGAGAGATCCCAGTGGCCATTAAAACTCTGAAAGCCGGTTACACAGAGAAGCAGAGGAGGGACTTCCTGGGCGAGGCCAGCATCATGGGCCAGTTCGAACATCCCAATATCATCCACCTGAAGGGGGTGGTCACTAAGAGTAAACCAGTGATGATAATAACAGAATATATGGAGAATGGATCCCTTGACACCTTTTTGAAGAAGAACGATGGTCAGTTCACTGTCATCCAGTTGGTTGGCATGCTGCGTGGCATTGCTTCGGGCATGCGCTACCTCTCTGAGATGGGCTATGTGCACCGTGACCTAGCTGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCCGACTTCGGCTTGTCGAGAGTGCTGGAGGACGACCCAGAGGCGGCCTACACAACCCGTGGAGGGAAGATTCCCATTAGGTGGACGGCTCCAGAGGCCATCGCCTACAGGAAATTCACTTCAGCCAGTGATGTGTGGAGCTACGGCATTGTTATGTGGGAAGTAATGTCGTACGGCGAGAGACCATACTGGGAGATGAGCAATCAAGACGTGATAAAGGCAGTGGAGGAGAACTACAGACTCCCGGGTCCCATGGACTGCCCGACTGCCCTCTATCATCTCATGATGGACTGCTGGCAGAAAGACAGGAACAGCCGGCCCAAATTTGAAGAGATTGTCAGCTTATTGGACAAACTCATTCGCAATCCCAGCAGCCTGAAGAGTCTCATTAACCCATCTAACAGAGTGTCCAATTTATTAGTGGAGCACGGGAGCCCTGAGGGCTGTGTATTCAGATCGGTGGAGGAATGGTTAGAGGCCATAAAAATGGGTCGATACACCGAGCTTTTCATGGAAAGTGGATACACTTCTCTGGAAGTAGTCACTCAAATGACCTTGGAAGATCTTAGGAGGGTTGGAATCACTTTGGCCGGCCATCAGAAAAAGATTCTCAACAGCATTCAGGAGATGCGAGTCCAAATGATGAACGCCACTATGCCCATC
>TU482186
TCTAGCTTTGAGGAGCTAGATGTAGAGAGCGGTTACGATTCGAATACGACCGCTGGGCAATATCATACAAGGAGCTGCTCGAGGTCGTTACTCAAGTGGTGGTCAAGCTCAACAACGATTGGCCCAGTCAAAGGAGGGAGGCACCCCATAGCAAACTGGATGATCGCTTCCTTACCAGCGGTCAGGCCCAGCCACCAAAAGGGAACCTCCCTTTCTTTCCCGATCTTCACAATGAAATCTCAAGGTCATGGAAATCCCCATATTCTGCCAGTGTCCACAATCCCACAATGTTTTATTCATTTATCATGGGATTGAATGTACAAGTCGATGCCTCGGGTTGAAGAGACGCTTGGAATCTTTTGTTCTCCTGCAATGGCTTTGTCAATGAAGAGGCCGGCCTTGCCTTCCAGGCATGTGGTGTAACATCTGCACTGGTTGGCATGGCCTACCATTGTGGTGTTACAGGCCTACCAGTCTGACCTGCTTAAAATATTTGATACCGGGGAGCTGAAGCGGCGAAAGAACTCTGCAGAGCCACAGAACTGTCTCTAAGCCACTAAGTAAACGGCCCGTGCCATCGGCCATTCTATGGCAGCCATGGAGAGACACCTGTGGCTCAAACTTTCGGCGATAAAAGAAAAAGCCTTTTTGCTGGAAGCCCCGGTATTGACGTCTGGCCTATTTGGCAATGCTGTCAGTGCCGTCGTCGATAGGTTTCAGGTGGCAAAGGATCAGTTGGAAGCATTCCAGTAATTTATCCCTTGCCGGGTCCAGCAGGCCGGGCCCTCATCTTCCTGTCCCACACATAGCTTCAGGAGGGAGGAACAGAAGGCCAGTGTGGCTGCTCTTGTTCCCCCTCACAAAGACTCGGAAGCTTACCAGTACTGGGTTCTTCCCTTTGGCCTAGACTTGTCTCACCAAGTGCAACCTGTAGTGCAGGCATCCTCTCAGTATGGCGGCGTGGGTATTATCAATCCCATAGTGTCAACGCAATGATGCGGCTTCAGTGTTCCCTCGAAAGGTAACCCAGTTCCCTGAGAATGGGAACCAGACACCATGTCGCATTGCCACAGAGGTGTAAAGAGTGCCTGAAAACCATACTAGAGTAAAAGTACTGATACCTTACATCAAAAATGACTCCACTACAAGTTACAAGGAACCAATTCCAATACGACTTGAGTAAAAGTCTTAAAGTATCTGAATTTAACAGTACTTAAGTATTTTACTCATGCTGAATGTAGGCTCAGAGATGCACTAGTCCTGAGAGACATAACAGTGAAAATAAGAAACAATTGATTTGTAAGATGAGAAATCAAGTTTATTTTCTAAAATCAAAATAAAACTGAACACCTCAATGTTGCAACAAATCAAGGTCGACACAACAACCTTTTAAATGTCTACAAACTCTCAAGTCTCAGTTGAGCTCAAGTGCACAGAAAGGCCATAAGTAAACCAATATCCTTCAAAACAGTCTTGTCAATATAACGGATAAAAAAAAAAAAAAAAAAATGTTAAGTAAAATTAAATAGTCAAAGTCTACTGTATGTGCTGGTTTGAGCCTCATAACCAGCTGCAATCATTTCCTCATCTAATAAATAAAATATCTGCGATCAGCAACTACCTGCTAATGCACTCACATTCATGTAAAGCATCCTTGTTGACAAGTTTTGGGTGAGTAAAGGCAAAATGCACAAGATGTAGTACCTTCAATGCCCTTAGATGGCGATATTGCTTCTTTATATCAGAAACAAACTGCTGCAGAAAAAGTTAGCTGCCATGAAAAATGTAATTTGTAATTGCATTACTCATCACAAATGTAGTGGAGTAAAAAGTACATTTACTTGCTCAAAAATGTAGTCAAGTAGAGAGTAAAAGTTGCCAATATCTTTGTTACTCAGTACAACTACAAAGTAGCCAAAAAGATACTTAAGTACAGTAACTAATTACATTTACTCAAGTACTTTACACCTCTGCATTGCCATACTTCAAGTACGCCTGCGTGGCTTTTTCAGACAAGTGAATCTGGTGACGCTCTTGTGAAGGTTTTATTTATAGACTCTACATTGCATGACCTGACTTCATCCATGGCCAATAGATTGCCGTGTACTACACATGATTCAGACACCGGCTCACGCTAAAGGCATTCCCAAAGCGTCAAAACAATGACATGGCATCTCAGGGAACTGGGTTTTATGTAACCCTGAGTTAATTTCTGTTCTGGAAAATTTTGCTAATTAGTGTATATTTAGTGCACATTTGCCTCATTTTGCATATTTAAACATTCCAGAAAACTTGTAATACAAAAGAAAAAAAGGAATTGTGTATTTTATAGATTATGTGAAGAAAAAATATGGTTTCAGTGTGTCCTCAGACTTTTGGACCTTTGTGTATTGTAACAGTTATTACAGTATTATAACAAATTTATTTATACATTATTCTGCTTGAGTCAGCTCAGATCCGTAAATGTTTTTAGTATCCAGCCTTCACCTAGAACTTTAATGTCAGGTTTATGCATCCATTTGTTCACCACTGTACCTGTCTCTCCTGCAGAGTGTCCAATTTATTAGTGGAGCACGGGAGCCCTGAGGGCTGTGTATTCAGATCGGTGGAGGAATGGTTAGAGGCCATAAAAATGGGTCGATACACCGAGCTTTTCATGGAAAGTGGATACACTTCTCTGGAAGTAGTCACTCAAATGACCTTGGAAGATCTTAGGAGGGTTGGAATCACTTTGGCCGGCCATCAGAAAAAGATTCTCAACAGCATTCAGGAGATGCGAGTCCAAATGATGAACGCCACTATGCCCATCTGAGACCTGCTTCCGAGGAACTTCCAATAGTAGCCTAGCACTTTCTATGGACACTTATTTATTGAGCGGAACTATTTAACAATGACATTTGACGCTAAAGGGAAAAAAAAAAAAAATGCTGGACAGATGAACAAACAATTACCGTTTCGTTTGTTCAAAGCCTCCAAACTAAGAGTCACAGGAGAAACTTGACTGAAATATTGAGTCATTGTTTGGAAAAGTGTGGCACATCTCCAGGTAGGACTACTGACTTGGGATCAGGTGTCTCTGGGCTGAATGTATAGCATTTTTCCATGACCTCATTCAACAATATTATTACCTCCGGAATTTTCAGCTCGGATGTTTTTCTCACACCAAGTTCACCTGGGGCGAAGTTCAGGCAGTGAGACTGAAGTCATATCATGGGCTGAGGGAACGTATGGCAGTGTTAAACAAAGCAATAGTAGATTTTGAGCTTGATGTTGATTTTACTTTGTTCTGAATTGTTGCTTCCTTGTTTCAATAAGAGGACAAAGCAATGGACAGGATCATTTTCCTTTTGCACAATATATGTGTTGTGAAGGGCGGAGGAAATGCATTTGTATTTGAAAATGTGACACGTTTCCAAACCACAAGTTTATTTTAGTTCCACTGATGTTTTGATGTTTTAAATGTAAATAGTGTACAGTTGCGTAGATAAAGTGGAGCTCAAATGCATCCATCCATGTTCATGTGGGGTTGATATACTTTACTTTAGTTGCCGGGTGGGCTAACATACTATGTATATTCAGTCCAGTCAATAAATGTTTATATTGCCTCTCAGTGCTTCATTAGATAGAAAATGAAAAATTGTTTTGCCTTTGATGTGTGAACTGTGCTATATTTTGCTACCCATTCTTTTGCCTTGCTCAATTTTCACAGTATGGTGGATATTAAAGTCAACATGAACTCAAAACGGACCCTATTTACTTTGTTAATTCAGGTTTACAGTTTTATTGTGAACAATTCATCGTTTTCATGTTTTCTGTATAACTTTTAAAATTCAAAATGTAATAACTTAGCAAATAATGATAGATTGGGATACAATGAAGTACATCACGTTACTGTAGTAAAATGGGTTGCGAATATAGTTTCATGTTGACTTTAAGTTGGTTCATTATGTCAGACATTGCATTAGCAAAAACAGTAAAAATAAGTTCTATGTGTTGCATCTGAGGCAGGGTGTCGGTTACTGTTGACAATAATTTTGACCCATCCCTCAGTGTTCAAACAAGCAGTAAATTGTGTATATTTACTGCAAATAGACGTTATCACAAAAGTAGGCCAGAAAGTTTCTTTTATTGTAAAGAACTTCTCTAAATTATAAATGTTAAGCTGTTGAGTAAAATGTCCTTTTTTGGTTGGGCAACCTTTGGTTATCAACAAAAAGAGTTTTGACAAAAGTGTTGAGTCATGCACATGCAGTAAGAGAAGACAATAATGTAGTTAGCCTAGCATGCTAATGTTATCAGTCGCCCATGTCCTTTTCTAATGTTGCCTTCACATGCTATCGGAATTATCTTAAATTCAAGTTTTATAGTTGGAAATTGGACATGAACGCCCTCTCAAGTTGTATTTACTATTGTGAAACTTTATACTAGTTTCCGAGTTGGGCGTGCCATAAATTTTAAACATGGCGGAGGGGAGAATGATTGCTGCTGTGACTGCTATTCTTTATTACTTTCACCTTTTCTTGTCATTAAATTAGTGCATATTTACATAAATGAGTAAACATTTGAAGGACATTGTATGTTTATACAGAGCGAAAATAGCATGTATTTGACCGAAATTCCAGAATCGTCAGCAAGCTGTGAATGTTTATGGTTGTCAACGAATGGGACACTACACTTTATTCAAAATTAAATATTTTCAGTACATTTTGGCTTAAATAAAATTTCCCCAATTAATAGGAAGAATAAACATGGTGTCCTCCATGAACTTTATTCTTTCCGACAACACAGCACTTGAACGCATTGAGCTTGTAATCATGACTTCAGAAGTGGGAAGTAAGAATCTTCCAATAGCATGTGAAGTCGGCATAACTTCTCAAAAGAAGTAGAATGAGTTTTATTGTCTTTTTATGTACACTGAAGTCAAAATTATTGTCAGTGTTAATCGACTAAATGCCACTCATTATAGAATTATTTCTTTCATAATAAAAGGAAATGTTGAATATTAGGACTCGTATTCAGAAATTCCAGGCATTGGGACAATTCTAACCATATTTTAGGTCCATAATTTTTATTACAGCACATTATTTTCCTATTAACACTACAGAAAGGCCACAAGATTGTATTAAAAAGTGCTCAAATATGTCACGCATTTCCTCAAAACATCTTATAACTGCTTATACTTATGGTCAGTTTAAGTATGTCCATTAAGTCCACTCTGGTAGAGATATTTATTACTTTTAATTTCATGAAATTTGATCTTATCAAATAAATGGCACCATAATGCTCCTTAA

Function

symbol description
epha5 Predicted to enable GPI-linked ephrin receptor activity; growth factor binding activity; and transmembrane-ephrin receptor activity. Involved in neuron development. Located in several cellular components, including external side of plasma membrane; neuronal cell body; and rough endoplasmic reticulum.

GO:

id name namespace
GO:0009897 external side of plasma membrane cellular_component

KEGG:

id description
K05106 EPHA5, EHK1, TYRO4; Eph receptor A5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_02993734_03052509.mRNA False 2799 mRNA 0.51 15 2993734 3052509
TU482186 True 5291 lncRNA 0.39 2 3048746 3054991

Neighbor

gene id symbol gene type direction distance location
CI01000304_02810127_02814735 NA coding upstream 178658 2810127 ~ 2815076 (+)
CI01000304_02672677_02672967 NA coding upstream 320286 2672620 ~ 2673448 (+)
CI01000304_02558750_02584199 NA coding upstream 408539 2558750 ~ 2585195 (+)
CI01000304_02267341_02290220 SNX30, SNX30.S coding upstream 703451 2267341 ~ 2290283 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding upstream 729656 2253894 ~ 2264078 (+)
CI01000304_03127839_03154603 NA coding downstream 74084 3126593 ~ 3154797 (+)
CI01000304_03193646_03207372 LPAR1 coding downstream 140879 3193388 ~ 3208382 (+)
CI01000304_03261474_03267659 RASSF6 coding downstream 208965 3261474 ~ 3268074 (+)
CI01000304_03278369_03283013 TMEM267 coding downstream 223799 3276308 ~ 3283183 (+)
CI01000304_03353284_03357099 NA coding downstream 299232 3351741 ~ 3357564 (+)
G419724 NA non-coding upstream 51784 2941696 ~ 2941950 (+)
G419647 NA non-coding upstream 174473 2818941 ~ 2819261 (+)
G419636 NA non-coding upstream 193098 2800418 ~ 2800636 (+)
G419635 NA non-coding upstream 193913 2799554 ~ 2799821 (+)
G419542 NA non-coding upstream 302886 2685810 ~ 2690848 (+)
G419802 NA non-coding downstream 25094 3077603 ~ 3077809 (+)
G419806 NA non-coding downstream 31614 3084123 ~ 3084345 (+)
G419808 NA non-coding downstream 43196 3095705 ~ 3095938 (+)
G419862 NA non-coding downstream 116925 3169434 ~ 3306051 (+)
G419875 NA non-coding downstream 234892 3287401 ~ 3379400 (+)
G418981 NA other upstream 900056 2092494 ~ 2093678 (+)
G418116 NA other upstream 2118485 872670 ~ 875249 (+)
G418059 NA other upstream 2429283 558092 ~ 564451 (+)
G417987 NA other upstream 2765881 226703 ~ 227853 (+)
G420445 NA other downstream 1250827 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 2120714 5173426 ~ 5176791 (+)
G421162 NA other downstream 3188724 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 4300140 7352621 ~ 7354396 (+)
G421435 NA other downstream 4431632 7484141 ~ 7484688 (+)

Expression


Co-expression Network