CI01000304_03268621_03269674


Basic Information

Item Value
gene id CI01000304_03268621_03269674
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3268621 ~ 3270242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_03268621_03269674.mRNA
AGATAAAATAATAATAACAATAATAATAATAATAATTAAAAAATATAAATAAATAAATAAATAAATCTATGCCACAAAAAAAAAGAAAAAAAAAAAAAGAAAGAAAGAAGTGACATGTTAATCAGGTATGCCGTAGCGTAGGCATAAATAAGCAGTGACGTTTGTTCTCAAGTGTAGTTAAAGTGTAGTTAAACTCTGTAAGCTTCACCTGTAAGTAACAGGAAGCTAAATTACATGCCGAAAAGCTGTCTACGTAGGCTACTGACAGTAGATCGGCAGCTTACGGTATAAGTAGATTACCCTTTATTTCCTCCTTTATACACACACACACACACACACACACACACACACTTGTGTGTACACAGAATGCTTTCCCTTGACTTAGGCTACTGTCTGTGTGGATTCACCCTCATTACTTCGGTGGGCGTCACACGAGCTCCACCCTGACTGGCGGGAAGGGCGAGTGAGGTATCAGAACGCGTCAGGCATTCTATGACTACATGGCAGATTCCTAAAAGCCTCTCCACATTCACTGGATCATTCTCTCAGAGATCACGCAGCCGAAGTCATGGATGCTTGCTTTCTTCTCCTTGTGTCTTTTCTCTCCGTGTTTCATTTCAGCAGTGCTGACCAGCCTTTGGAGGAAACAATAGTTGTAGCAAGAAATGTAGATCTGCTCGGTGGCTGGACCGACGCCAACCCAGAGAGGGAAGATGTTCAAGAAGCTGCTAAAGAAGCTGTAGAGTCATTCAACACGAAGTCCAAAGCAAAGAAATACTTCAAACTTATCAATATTATATCGGCTCGCACTCAGGTAACAAATATGATAAACTACAAAATAGAGGCCACTATTGGAAAGACAAAATGCCGCAAATCCAAAGATGCAAATATTGAAGGTGCAAATATTGAGGGTTGTGGCATGGCAAGGAAGCAACTGGCATGTAAGTTTGAAGTAACCCTTAACCCAAGGAATGATGACCATGAGGTGCAGAAG

Function

NR:

description
novel protein similar to human cystatin

GO:

id name namespace
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_03268621_03269674.mRNA True 994 mRNA 0.41 4 3268621 3270242

Neighbor

gene id symbol gene type direction distance location
CI01000304_03214897_03241215 MUSK coding downstream 27406 3213483 ~ 3241215 (-)
CI01000304_03158811_03160301 NA coding downstream 108320 3158493 ~ 3160301 (-)
CI01000304_02900497_02900924 NA coding downstream 366519 2899799 ~ 2902102 (-)
CI01000304_02694838_02711363 NA coding downstream 557119 2694660 ~ 2711502 (-)
CI01000304_02595522_02611332 GRIN3A coding downstream 657289 2595522 ~ 2611332 (-)
CI01000304_03305219_03313206 NA coding upstream 34977 3305219 ~ 3313398 (-)
CI01000304_03398119_03398652 NA coding upstream 127797 3398039 ~ 3400370 (-)
CI01000304_03408538_03449725 CNTFR coding upstream 138014 3408256 ~ 3449901 (-)
CI01000304_03483866_03493010 NA coding upstream 213598 3483840 ~ 3493010 (-)
CI01000304_03529068_03531228 NA coding upstream 258285 3528527 ~ 3531304 (-)
G419842 NA non-coding downstream 181996 3085419 ~ 3086625 (-)
G419840 NA non-coding downstream 189019 3079366 ~ 3079602 (-)
G419783 NA non-coding downstream 304818 2963590 ~ 2963803 (-)
G419777 NA non-coding downstream 326674 2941699 ~ 2941947 (-)
G419756 NA non-coding downstream 374132 2889285 ~ 2894489 (-)
G420221 NA non-coding upstream 117436 3387678 ~ 3389213 (-)
G420150 NA non-coding upstream 149680 3419922 ~ 3478109 (-)
G421465 NA non-coding upstream 489176 3759418 ~ 3759745 (-)
G421471 NA non-coding upstream 518477 3788719 ~ 3788926 (-)
CI01000304_04007023_04008270 YEE9, IER3IP1 non-coding upstream 732797 4006069 ~ 4009056 (-)
G419354 NA other downstream 1002380 2262502 ~ 2266241 (-)
G419353 NA other downstream 1032515 2229384 ~ 2236106 (-)
CI01000304_04263955_04264962 NA other upstream 993503 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 1391574 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 3207209 6480743 ~ 6483986 (-)
G422354 NA other upstream 3360844 6631086 ~ 6631499 (-)
G422378 NA other upstream 3474437 6744679 ~ 6783046 (-)

Expression


Co-expression Network