CI01000304_03398119_03398652


Basic Information

Item Value
gene id CI01000304_03398119_03398652
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3398039 ~ 3400370 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_03398119_03398652.mRNA
AGGAATTAAGTTTTATTCACAGCCAGGAGCTCACTGGTCACAACAACCAGTCTCCCTGAACAGAAAGATACATGTACATTTATATCTTACAGCTGAGTAAAAATCAATGCCACTCAAGTCTTCTTCACTGTAATTGGTTAATCTGTTCTGGTGATTGGATTGAAATGATCTAAGCTAATCATATGACTGTTAGTTCTACTGTTTTAAGCACTTTTTTGGGTAAGTCTAGATTATTTGATCATGTGATGTAATATTATTATTATTATTATTATTAATAATAATAATAATAATAATAATAATAATTCATTACATTTATATAGCGCTTTTCTGGGTACTCAAAGCGCTTTACATATGGAAGGGGGAATCTTCTCAACCACCACCAATGTGCTGCATCCACCTGGATAATGCGACGGCAGCCATTTTTGCGCCAGAACGACCCACCACACTCCAGCTTATTGGTGGAGAGGAGACAGAGTGATGAAGCCAATCAGTGTATATGGGGATGATTAGGAGTCCATGATGGACAGAGGCCAATGGGCAAATTTGGTCAGGATGTATAAATGATTTTTGACCTGAGCATCCTTAGTCTGTACTTTTTTGCACTTTCCATGTTAAAATGCTCTTTTGACCAATTCTGAGGCCATTACATAAAACATTTCCATCACAGGACCCTAACTCCTGTTGGGCATTTCTAATGGCCTTTTCACATAGTGAAAAGTGAGAAAGTCTTTAAAGTGAGAAACTTCTCAGGAACTTCTTCAATAGGCTCGAAGGGAGCCATAGAAAGGCCTTGCAAAACAACGGCCACGCCTGCACCATGGCGTCCAGTCCAAGCGGTGCTGGGTTTGACATTGCAAACCATAGTGGACACTGAGTCATCTCAGAGACACAAACAGGTCCACTTCGGCCTGACCGAAGTTCTCCCATAGGAGCTCCACCACCTCAGGGTGAAGTCTCCATTCCCCGGGCCTCGGCCCCTGTCTTGACAGGATGTCTGCACCCTGATTCAGGTGCCCTGATAGAACGCAGTCTCCCTTGGGCCCACATGAGGATCTGTTGAGCCAATCTGTATAACGGGCATGACCTCAGACCCCCCGATGATTTAAATATGAGACCACCGATGTGTTGTCGGAACGAACAAGTACATGATGGCCTCTGAGGTCTAGGACGAAGTGTTTCAGAGCCCGAAACACCGCCAACATCTCCAGGCGATTTATGTGCCAGTCGTCGATGTAGTTAGAATGTGAATGCCCCGCATCTACACACTTTGTGAAAGTGCGGAGTGACAAAGCTAGGCCAAAAGGAAGAACTCGTTATTGGTACGCTTCGCCCCCAAAAGCGAACCTCAGAAACTTCCTGTGTTGTGGGAGGATGGAAACGTGGAAGTATGCGTCCTTTAGATCTATCGTGACAAACCAGTCCTCGGACCTGATTTGTGAAACGATCTGTTTGAACTTGAGCTTCCTACAGACCGATTTAGTTAGCGCAGATCTAAAATTGGACGCAACCCCCCATCCTTTTTTGGAACAATGAAGTACCGGCTGTAAAACTTTGCCGAAGCCTACTTAGAGATAATAACAGTTCTCAGATCCGTTTTACCCTTTGAAGGCTTCAGCTGCGAGCTTCGCCCCGATCCCCCTAGGGGGAGTATGGGTAGCGATGCTCAGCTTGGATTTAGAAAGGACACGAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGACACAAAGCACTCGGCGCATGCCCTTACCATAAACATGGATTTTAGAAAGGGCACGAAGCACTCGCCGCATGCCCTTACCATAAACATGGATTTAGAAAAGTACATTTAGTTATACCTTCAATATTTGTAAGTTTTCAAAGTCAGAAAATTATTTGATTTAATTTCTCAAAATTAAATGCAGCAAATAAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_03398119_03398652.mRNA True 2332 mRNA 0.44 1 3398039 3400370

Neighbor

gene id symbol gene type direction distance location
CI01000304_03305219_03313206 NA coding downstream 84641 3305219 ~ 3313398 (-)
CI01000304_03268621_03269674 NA coding downstream 127797 3268621 ~ 3270242 (-)
CI01000304_03214897_03241215 MUSK coding downstream 156824 3213483 ~ 3241215 (-)
CI01000304_03158811_03160301 NA coding downstream 237738 3158493 ~ 3160301 (-)
CI01000304_02900497_02900924 NA coding downstream 495937 2899799 ~ 2902102 (-)
CI01000304_03408538_03449725 CNTFR coding upstream 7886 3408256 ~ 3449901 (-)
CI01000304_03483866_03493010 NA coding upstream 83470 3483840 ~ 3493010 (-)
CI01000304_03529068_03531228 NA coding upstream 128157 3528527 ~ 3531304 (-)
CI01000304_03763183_03764351 NA coding upstream 362785 3763155 ~ 3764411 (-)
CI01000304_03830154_03833600 NA coding upstream 427821 3828191 ~ 3833600 (-)
G420221 NA non-coding downstream 8826 3387678 ~ 3389213 (-)
G419842 NA non-coding downstream 311414 3085419 ~ 3086625 (-)
G419840 NA non-coding downstream 318437 3079366 ~ 3079602 (-)
G419783 NA non-coding downstream 434236 2963590 ~ 2963803 (-)
G419777 NA non-coding downstream 456092 2941699 ~ 2941947 (-)
G420150 NA non-coding upstream 19552 3419922 ~ 3478109 (-)
G421465 NA non-coding upstream 359048 3759418 ~ 3759745 (-)
G421471 NA non-coding upstream 388349 3788719 ~ 3788926 (-)
CI01000304_04007023_04008270 YEE9, IER3IP1 non-coding upstream 602669 4006069 ~ 4009056 (-)
G421655 NA non-coding upstream 706893 4107263 ~ 4107557 (-)
G419354 NA other downstream 1131798 2262502 ~ 2266241 (-)
G419353 NA other downstream 1161933 2229384 ~ 2236106 (-)
CI01000304_04263955_04264962 NA other upstream 863375 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 1261446 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 3077081 6480743 ~ 6483986 (-)
G422354 NA other upstream 3230716 6631086 ~ 6631499 (-)
G422378 NA other upstream 3344309 6744679 ~ 6783046 (-)

Expression


Co-expression Network