CI01000304_03666156_03669795


Basic Information

Item Value
gene id CI01000304_03666156_03669795
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3666156 ~ 3670934 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_03666156_03669795.mRNA
ATGTCTACACACTGTGGCAATCCAATGGTAGAGAAAGGAGCCCAGGAACAAATAACTGAGGCCAAGCGCCATGCTGCACAAATCAGTCCTACTGATGTTGAGACTTTGATAGCGCTGTTGGAAAACCATCAAGTGATAGCTGAGGTAAAGAAAGTTAATTGTCAAGATCCGCCCAGAATGGGCCACCTCAGCACCAGAGGAGGGGGGCCACTGAAGAACCAGAGTGATTCTCAGACAATGGCTCCCCGCATCCCAGTGAGACTGGCCAACCGAGACACAGAAGTCCTTCTAGATTCAGGAAGTATGGTTACCTTAGTTTGGCCAGAATTTGCACTGGGCCAGAAAGGAGATCAGAAAAGCTACCCCACAGTGCAGGTGGAGATGGTCACTTCCGGAGGAGTATGCACTTTCAAAGCTGGGGTGGTCAACAGCCTGGCAGTACCAGTCTTGGTAGGTAGGGACTGCCTAGTGTATGAGCGTTACTGGCCTCTAGTCAACCGAAAACCCCTTGGAAGGCCTAAAAGTCAAGTAAAGCCAAGATCCAAGAAACCTCAGCTCCTCCGGGCTTTTGCAGCAGCCTCAGACCAGGAATCAGAGACAGAAGTTATAGAAAGAGACCGGACAGGGCAGTTTGGAACAGCTCACCTACAAGACCCTAACCTCAAACAGGCTTGGAGAAGCATCAAGGTTGCTGACGACCAGTTACTGGAGGGGGTAAGTGAACTAACCTATCCTCATTTTGCTGTTAAAAATACCTTACTGTACTGGGTCATTAAGACTGAAGATGAGGTTGTTGAACAGCTGTTGGTACCTAAACCCTATATCTCCAGAGTACTGTACTTGGCTCACTCCCACCTCCTGGGTGCCCACCTGGGTACAGAAAAAACATATGAACAAATACTGAGGAGGTTTTACTGGCCAGGGGTGAAGCGAGCAGTTGAAGATTATTGCAGACAGTGTGCAACCTGCCAGAAGACCAGCCCCAAGGTGAGCCAGATTCGTACCTCTGTTTTTCATCCTGAAACAGATGGATTGGTTGAGAGGTTTAATCAGACCTTAAAGCAAATGTTGAGGAAACTGATTGAGCACATGAAACAGGCTCAAGAGGCCCAAACACATATCTACAACAGGTGGGGCCAACTAAGAGAGTTTCAACCAGGAGAAAAGGTCATGGTGTTGGTCCCCACTCACGAATGCAAGTTTCTTGCCAAGTGGCATGGGCCATCTGAAGCGCTTAAACAAGTAGGTCCAGTGAACAATAAGGTAAGGCAGCCCGGCCGGCGCAGGGTCCTCCAGACCTATCATGTGAATTTACTCAAGAAATGGTGTGACCCAGAACCATGTCTACTCTCCACCCTGTCATCCGAAGTACCCTCCCAAGTACCCATGGAAGTGGAAATGGGAGCCCAACTGACCCCAAACCAGAAACAAGACCTCCGGGAGTTGGTAAGCCAACATTTAGATGTATTCTCTCTATTTCCAGGTCGGACCACAGTGGTGTACCATGACATAGTCACAGAACCTGGGAAAAAAGTGAGACTGAAGTCCTATCGCATCCCAGAAGCCCGAAGAGAAGCAATCCATGAAGAAGAATATGCAGCGGCCTACCTTGATGACATCGTAGTTCACAGTGCTGACTGGTCTTCGCACCTGAAGAGACTGAATGCTGTTCTAAATGCCCTCTGGGAGGCGGGGTTAACAGCCAACCCAACAAAATGTAAACTGGGATTAGAAGAGGCAGAATATCTTGGTTTCACCATAGGACGTGGTAACGTAAGGCCTCAGAAACGAAAGACAGACACAATTTCCCAGTGGCTGAGACCGGTAACCAAGAAACAAGTAAAAACATTCCTGGGTCTGGTTGGATAACACTGGCAGTTTATCCCAAACTTTGCAACCCTTGCAGCCCCCCTGCATGACTTGACCAAAAACCACCTCTCTCACCAAGTTGTCTGGTCCGCTGAAGCAGAAATGGCCTTTTCCTCTCTTAAGCTAACCCTGGGTGGGAATCCAGTGGTAACCCTAGGCTTCCAACGACCTTTCATCGTTCGAACTGATGCCTCCGAAACGGGCTTAGGAGCAGTCCTCTCACAGCTGAGAAATGGAAAAGAACATCCTATTACTTTCATCAGTTGTAAGTTACTCAAACATGAACATAATTATTCTACCGTGGAGAAAGAGGGCTTGGCCATTAAGTGCTCCCTGGAAAAAATGTGATATTACCTGCTGGAGAGAATTCACCCTTGTTACTGACCACGCTCCTTTAAAATGTGTGGTAATCCAATGGTGGAGAAAGGAGCCCAGGAACAAAGAAGTAGGTCCCAACTAGGAAAAGTCATCAATTGTGAGTACTTCCACCTGTTCACACTCCAAACATGGAAGCCACAAGAAAATGTGCATCTTTTGAACTATAACAAAATATTAGCTATATAGGTCATTATTGGTATAAGTGATTTTTGTCCCATATATTAATTTATTTAAAAATACAATTAAAATGCAGTCCAGGCAGCAGACTTTTATACATCCATTTCACATTTTCAAGAACCCTCCAAAAAAAGTATCAGTCATTATTGTACTGTAATATAATATTACCGAATGGGTCTTAGTGATTTATAGGTATTAGCGATTTTTGATTTTTGATAAAATAACATTAATATATCTTCTGTGATGAGCACGTTTTTATTTTCTGAATTAAAATTTATTTTGCTAAATCATTATTCTAATATCATTCAGATACCATTATAATATATTTTAAATTTGGTTAAAGTTTTAGTTTTTTTTTTTTTTTTTTTTTTTTAAATGGTTTTAGTTTTAGTTTCAGTTAACTATAATAACCTTGGTATGAATTCAAAAATATCAGCTACAACTTGACCAGACTTTACAGTGAAAGTCAAAAGCTTGAAGCGAAGTCCATGCAGGAGTTTGGCCTTCAGAAATTGCTTGTTACTGGAAACTTGCTTAGGACACAAAAAATCCTGGTTAAGACAGAATTTCTTGGTAGATCATGA

Function

NR:

description
LReO_3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_03666156_03669795.mRNA True 3008 mRNA 0.44 7 3666156 3670934

Neighbor

gene id symbol gene type direction distance location
CI01000304_03615644_03617791 NA coding upstream 47748 3614933 ~ 3618408 (+)
CI01000304_03376929_03378015 NA coding upstream 287973 3376871 ~ 3378183 (+)
CI01000304_03353284_03357099 NA coding upstream 308592 3351741 ~ 3357564 (+)
CI01000304_03278369_03283013 TMEM267 coding upstream 382973 3276308 ~ 3283183 (+)
CI01000304_03261474_03267659 RASSF6 coding upstream 398082 3261474 ~ 3268074 (+)
CI01000304_03975032_03978067 SIGMAR1, SIGMAR1.L coding downstream 304098 3975032 ~ 3978545 (+)
CI01000304_03984177_03996203 KATNAL2 coding downstream 313243 3984177 ~ 3996401 (+)
CI01000304_04170630_04190266 NA coding downstream 499696 4170630 ~ 4190266 (+)
CI01000304_04190428_04208535 NA coding downstream 519494 4190428 ~ 4208698 (+)
CI01000304_04223309_04223602 NA coding downstream 552375 4223309 ~ 4223769 (+)
G419940 NA non-coding upstream 276715 3389177 ~ 3389441 (+)
G419937 NA non-coding upstream 284393 3381523 ~ 3381763 (+)
G419875 NA non-coding upstream 286756 3287401 ~ 3379400 (+)
G419862 NA non-coding upstream 360105 3169434 ~ 3306051 (+)
G419808 NA non-coding upstream 570218 3095705 ~ 3095938 (+)
G420104 NA non-coding downstream 21766 3692700 ~ 3695368 (+)
G420295 NA non-coding downstream 72907 3743841 ~ 3744102 (+)
G420301 NA non-coding downstream 88563 3759497 ~ 3759761 (+)
G420319 NA non-coding downstream 144359 3815293 ~ 3815758 (+)
G420330 NA non-coding downstream 163286 3834220 ~ 3834606 (+)
G418981 NA other upstream 1572478 2092494 ~ 2093678 (+)
G418116 NA other upstream 2790907 872670 ~ 875249 (+)
G418059 NA other upstream 3101705 558092 ~ 564451 (+)
G417987 NA other upstream 3438303 226703 ~ 227853 (+)
G420445 NA other downstream 632402 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 1502289 5173426 ~ 5176791 (+)
G421162 NA other downstream 2570299 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 3681715 7352621 ~ 7354396 (+)
G421435 NA other downstream 3813207 7484141 ~ 7484688 (+)

Expression


Co-expression Network