CI01000304_04230808_04231542


Basic Information

Item Value
gene id CI01000304_04230808_04231542
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4229815 ~ 4231901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04230808_04231542.mRNA
AATTAGTATCTACCAACTGTATAACTTTATTAACAAATCATTTATTCGAAATGACCACCATCATCAGCACCAAAGTCTCCCCTACAATTTTTCGTATCGCATGTGACGTAATGGCAAGTGGGCGGGGCCTTACAGGTGTGCCCAGAACAGACTGTCGAAACTTAGAGCAGGTTTGATGTTGACTAGACCGACAGTCACGTGACCAGATTTTATGGGATCCTCCCACTAGAAGTTTCTGCTGCTCTTCTACTTTTTAAACACTGGAAACAAAGTGATTCATTCCCAGCTGGGCTTTTTTGTGTGTTTGTGTGTAATCTCCCAAATCTACCATGCGAACTCCTGGAATTTTTATTTTCGGGATGGTGCTCGCACCTTGCGGGTGGATTCTGGAGCTGACCAGCACCGTGGCACCAGGCTGGCGCACGATTAACAACATCCCTGGAGAATCCTCCGATCTGGTCCTCCAGCAAGGATTATGGGACATCTGCAGGACTTTCACATCATCCCGGGATATTCTTTGCAACCAACAGGACACGCAGTACTTCAGCGCTCAGATCATCCAGATCGCGCGAGGATTGATGCTGGCGTCACTCATTCTCAATGTCATTGCCATCGGCGTGGCATCAGCCGGAGTCAGATGCTGGACTGATAACCCACAGTGGACTGTCGCTGGGATCGGTGGTCTTCTCATCTTCATCTCAGGGGTCCTCACCATCATACCAGTGGCGTGGTACACTCACATCATGACCTCCGTCTTCTCCACATCCACCGATATTCGTGTAGGATACTGCCTGGTTCTGGGCTTCATCGGTGGGATCATGGAGGTGCTCGGAGGTTTGGTGATGTCCATCGGGTTGTGTCGGTGCTGTGACGGTCGAAAGCGCGATCAAAGGCCGAGAACAAATGCGGTGAAGTCCGCGCGCGATCTATCTCCACCACACAGAGTCATAGTGCCCAGTGTAATCAGCGTGAGCAGCGCCAGTAGTGTCCCGTATTACTCCAAACAAAGTGAGATGGACTTCACACGAGCGAAGACGCAACAGGACAGACCAGTGAACACGGCGTATAAAGCACCTTACGACTCAGATTTGTAAAATACAAACTTTTAACCTTGTGAACGCAAGATGCTTACAAAAATCACCATGGTAACCATCGTTTCCGCGTGAAAATTCCGTAGTTTATCAACCAGATTGATCAAATCAGTCTTTCCAATGTCAACGTTTCATTTCGTTTTTTGAGTGCTGTTTAATGCCCAGTTATATTGTGAAAAGTTATATTACACATAACAGGACAATATTGTGAAAAACAAAAAATCTCGTAAATGCCTTAGGCTGTATTTTACAATGGCATTGTAAAATAGCTTATAATGATTTTCTAGTAAAACTCAAGTCACAAGTCAAAATTTCCTGTAAAAGGAAGTGGCCCAATGTTTAAATAGTTTTTATTTTTATTGCCAGTTATGTTTTGTTACATTTTAGGTTTTTAGTTCACGTTGAATATTATGTTAAGTGTGTTTGTGCATGGAAAGGCCTTTTTTGATTAACAATAATTCATAATGTGACCATCTGTTTTACCACCTGTATTATCATTGATGTTAGTGTATTTTAAGGTCATATTAATTACTCAGCTATGGTATTTTGGCAGAAATCATAGTAACTATTATAGGCCTACATTTTCTGCTTGTTAAGGGAAGTGAGGTTTTGAGGTTATATTGAGGAGCACTAACACCATTAGTTTGATTTTATACTTGGCACTTTATAATGTAAAGTCCTTATAATTTTGTTGGCAGTACCTTCAATGTCTTTTTGTAGCACACTGAGCTCTAATGTGTAAATACAGTAACTTATCAGGAACCACTTAAGTTTAACCAACTACAAAAAGCAAACATTCTTCTGAAGTAAGCTAATCTTTGCACAACCACTGCACATGGGACAGAAGTGTATGTCTCTGTTGGAAGAATATGTAAAATGTTTTGTGGAAGGTTTTTTTTTTCTTTTGCACAGTAATGTTGTAATTGACTTCCATCCATCAATTTTAATGCAAATTGTTGAAGGCTGTTTATATGAAGGCTACATGAATGTAATAAA

Function

NR:

description
LOC553515 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04230808_04231542.mRNA True 2087 mRNA 0.41 1 4229815 4231901

Neighbor

gene id symbol gene type direction distance location
CI01000304_04227914_04228723 NA coding downstream 672 4227120 ~ 4229143 (-)
CI01000304_04161154_04166640 NA coding downstream 63175 4160216 ~ 4166640 (-)
CI01000304_04144667_04151439 MAD2, SMAD2 coding downstream 76282 4144460 ~ 4153533 (-)
CI01000304_04012800_04017022 SKOR2 coding downstream 212538 4012800 ~ 4017277 (-)
CI01000304_04007023_04008270 YEE9, IER3IP1 coding downstream 220759 4006069 ~ 4009056 (-)
CI01000304_04253975_04256004 NA coding upstream 21510 4253411 ~ 4257602 (-)
CI01000304_04263955_04264962 NA coding upstream 31945 4263846 ~ 4265201 (-)
CI01000304_04269487_04273391 NA coding upstream 37301 4269202 ~ 4273391 (-)
CI01000304_04370274_04377315 PUM3 coding upstream 138373 4370274 ~ 4377481 (-)
CI01000304_04396799_04405867 SGTB coding upstream 164887 4396788 ~ 4405867 (-)
G421655 NA non-coding downstream 122258 4107263 ~ 4107557 (-)
G421471 NA non-coding downstream 440889 3788719 ~ 3788926 (-)
G421465 NA non-coding downstream 470070 3759418 ~ 3759745 (-)
G420150 NA non-coding downstream 751706 3419922 ~ 3478109 (-)
G421663 NA non-coding upstream 4396 4236297 ~ 4237760 (-)
G421719 NA non-coding upstream 71255 4303156 ~ 4303880 (-)
G421723 NA non-coding upstream 80458 4312359 ~ 4314973 (-)
G421728 NA non-coding upstream 103823 4335724 ~ 4335942 (-)
G421740 NA non-coding upstream 131565 4363466 ~ 4363736 (-)
G419354 NA other downstream 1963574 2262502 ~ 2266241 (-)
G419353 NA other downstream 1993709 2229384 ~ 2236106 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 429915 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 2245550 6480743 ~ 6483986 (-)
G422354 NA other upstream 2399185 6631086 ~ 6631499 (-)
G422378 NA other upstream 2512778 6744679 ~ 6783046 (-)

Expression


Co-expression Network