Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000304_04381131_04396006 |
| gene name | TRAPPC13 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 4381131 ~ 4396075 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| trappc13 | Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| K20310 | TRAPPC13; trafficking protein particle complex subunit 13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000304_04381131_04396006.mRNA | True | 1472 | mRNA | 0.47 | 12 | 4381131 | 4396075 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_04365876_04367947 | KCNV2, KCNV2A | coding | upstream | 12930 | 4365611 ~ 4368201 (+) |
| CI01000304_04346530_04362348 | VLDLR | coding | upstream | 17975 | 4346530 ~ 4363156 (+) |
| CI01000304_04318151_04331824 | SH3BP2 | coding | upstream | 49239 | 4318151 ~ 4331892 (+) |
| CI01000304_04236578_04239825 | NA | coding | upstream | 140736 | 4236338 ~ 4240395 (+) |
| CI01000304_04223309_04223602 | NA | coding | upstream | 157362 | 4223309 ~ 4223769 (+) |
| CI01000304_04407815_04421342 | NLN | coding | downstream | 11279 | 4407354 ~ 4421434 (+) |
| CI01000304_04461555_04498385 | ERBIN, ERBB2IP | coding | downstream | 65111 | 4461186 ~ 4499688 (+) |
| CI01000304_04512680_04515061 | ZFAND5B | coding | downstream | 116605 | 4512680 ~ 4516439 (+) |
| CI01000304_04563922_04573450 | NA | coding | downstream | 167634 | 4563709 ~ 4573450 (+) |
| CI01000304_04650911_04659754 | TRIM23 | coding | downstream | 254836 | 4650911 ~ 4660456 (+) |
| G420513 | NA | non-coding | upstream | 71724 | 4308819 ~ 4309407 (+) |
| G420504 | NA | non-coding | upstream | 87192 | 4293565 ~ 4293939 (+) |
| G420436 | NA | non-coding | upstream | 105885 | 4233809 ~ 4275246 (+) |
| G420438 | NA | non-coding | upstream | 115930 | 4263448 ~ 4265201 (+) |
| G420466 | NA | non-coding | upstream | 273573 | 4107238 ~ 4107558 (+) |
| G420642 | NA | non-coding | downstream | 155991 | 4552066 ~ 4552528 (+) |
| G420655 | NA | non-coding | downstream | 224047 | 4620122 ~ 4620710 (+) |
| G420663 | NA | non-coding | downstream | 236255 | 4632330 ~ 4632603 (+) |
| G420556 | NA | non-coding | downstream | 243388 | 4639463 ~ 4645086 (+) |
| G420673 | NA | non-coding | downstream | 274488 | 4670563 ~ 4670788 (+) |
| G420445 | NA | other | upstream | 77299 | 4303336 ~ 4303832 (+) |
| G418981 | NA | other | upstream | 2287453 | 2092494 ~ 2093678 (+) |
| G418116 | NA | other | upstream | 3505882 | 872670 ~ 875249 (+) |
| G418059 | NA | other | upstream | 3816680 | 558092 ~ 564451 (+) |
| G417987 | NA | other | upstream | 4153278 | 226703 ~ 227853 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | downstream | 777148 | 5173426 ~ 5176791 (+) |
| G421162 | NA | other | downstream | 1845158 | 6241233 ~ 6242997 (+) |
| CI01000304_07352697_07354032 | NA | other | downstream | 2956574 | 7352621 ~ 7354396 (+) |
| G421435 | NA | other | downstream | 3088066 | 7484141 ~ 7484688 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | other | downstream | 3582553 | 7979078 ~ 7980735 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
