CI01000304_04789939_04792844


Basic Information

Item Value
gene id CI01000304_04789939_04792844
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4789439 ~ 4792844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04789939_04792844.mRNA
GTCTCCTAGCAGTTGAGTTCTTCTCCTTTGGATCAGGTAAGTTATCTTCGGGATCAGGTAAGTTATCATTTTCAGAAAGAGTTACATCTGAAGTGTCTTGCCCAATGGTGGTCAACAATTTGGGAGGTTCTGGTGGAGTTCTTCCTGTTTGTGGCCGCACTACATACACAGGAACGCCTTCAGATTGTTTCACAACAACATACACATCTGACTCCACCCGGGTTCCAAGCATGTCAAGCAGGGTCCTATTGAAACTATTGGGACTCAAAGTCGGGCCCTTGAACACTATGGAGTTTCTCAGGGATGCCATAGTGGGTGAAGAAGTGGTCCCACAAGCAATTAGCTACCGTTCAAGCATTTTGGTTCGGAGTGGGGACAGCCACTGCATACTTGTTGAAGTGGTCGGCTTTTCAGAACTAAGAGTTTCAAGGTTTCAGGCAGCACAAGAGTTTCAGGCAGCACAAGTTGATGGTCTTGGATTTCATTCTTGGAATCAGGAGTGGACTGTGATAGGATGCACTCTCCCTTATATTGGAAGTAAACGCCTTGATAATGGGATGTAGCTGTAGCGAGGTTAGTAGATGTGGGAAGAAGGAGGCGGGAACCGGCGAACGTTTACAACACTTTAAGTGTTTATAAACAAACAACAAAACGAAAGTAAATGGCCCTCACGGACGACTGCCGCACACACAAACATAATAAAAACATTACACAAATCCAGGCCTGGTCCTTTCTCGTCCTTCACTGTCGTCGCTCCCCCTTTTATGCTTCCGGAGCTCCTCCGTGAGATACGAGACCGGTGCAGCGCGCAGCTGACACTCATTATCACTCACGCCACCGGCCTCGTGCCATTCCCCCACGGCTCTCGCCCCGCCCTGCCTGTCACAAATACTTTTTTCTTTGATGCATTGAAGTATTGCTTCATGCAGGATGCTTTGGGGATCTGTTTCTCTTCTGCTGTGTGGAGTAACAGGAGAAGTTTTGCAAAGGTAGGTGGGTTCTGCTTCCTCTGTTCTAGCTGCAGTTCAGATATTAAGATGTTGTCCCAGCAACCTCTAATAAA

Function

NR:

description
Pro-Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04789939_04792844.mRNA True 1063 mRNA 0.47 5 4789439 4792844

Neighbor

gene id symbol gene type direction distance location
CI01000304_04661808_04672936 PPWD1 coding downstream 116503 4661766 ~ 4672947 (-)
CI01000304_04579087_04595306 TJP2, TJP2A coding downstream 193099 4578438 ~ 4596340 (-)
CI01000304_04536971_04554186 MAMDC2B coding downstream 235253 4536971 ~ 4554186 (-)
CI01000304_04522897_04527887 SMC5 coding downstream 261552 4522849 ~ 4527887 (-)
CI01000304_04517750_04518058 NA coding downstream 271381 4517594 ~ 4518058 (-)
CI01000304_04809176_04857217 CWC27 coding upstream 16332 4809176 ~ 4857217 (-)
CI01000304_04894865_04896532 CSN4, COPS4 coding upstream 102021 4894865 ~ 4896705 (-)
CI01000304_04914520_04932141 KIAA1958, E130308A19RIK, RGD1310951 coding upstream 121676 4914520 ~ 4932141 (-)
CI01000304_04935603_04968053 HSDL2 coding upstream 142658 4935502 ~ 4968302 (-)
CI01000304_05039292_05067803 UGCG coding upstream 246142 5038986 ~ 5067814 (-)
G421860 NA non-coding downstream 8944 4780181 ~ 4780495 (-)
G421601 NA non-coding downstream 119373 4669654 ~ 4670066 (-)
G421795 NA non-coding downstream 139774 4649365 ~ 4649665 (-)
G421794 NA non-coding downstream 140474 4648552 ~ 4648965 (-)
G421787 NA non-coding downstream 155492 4633717 ~ 4633947 (-)
G421875 NA non-coding upstream 92730 4885574 ~ 4885773 (-)
G421884 NA non-coding upstream 115586 4908430 ~ 4908939 (-)
G421890 NA non-coding upstream 150947 4943791 ~ 4944002 (-)
G421891 NA non-coding upstream 151287 4944131 ~ 4944346 (-)
G421905 NA non-coding upstream 236193 5029037 ~ 5029363 (-)
CI01000304_04263955_04264962 NA other downstream 524238 4263846 ~ 4265201 (-)
G419354 NA other downstream 2523198 2262502 ~ 2266241 (-)
G419353 NA other downstream 2553333 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 1684607 6480743 ~ 6483986 (-)
G422354 NA other upstream 1838242 6631086 ~ 6631499 (-)
G422378 NA other upstream 1951835 6744679 ~ 6783046 (-)
G422810 NA other upstream 2837315 7630159 ~ 7652703 (-)
G423386 NA other upstream 4069379 8862223 ~ 8865296 (-)

Expression


Co-expression Network