CI01000304_04866074_04866590 (PLAC8.1)


Basic Information

Item Value
gene id CI01000304_04866074_04866590
gene name PLAC8.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4864986 ~ 4867070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04866074_04866590.mRNA
CCATATATAACAGGCTTATTGTACATGTTTCAGTGCATAGAGGAATATCCTGACTCAACTGCAAAGAAAAATCAGGTAAAGCTACTATTAAATTACCTATGTTTTGGTAAACTTTTTATATAAGTAAATACTACATCCAAATGTTGTGTTAGTTAAAAAACAACAATTTCTATGTCTGATTTTAACCTCCTTGGACCCAGGAATAGACTTTTGTCCTCTGTAGTGGACATTATATTTTACATCATACATGTCACAGTTTTACGTTCTGACATTAATTTAGTGATCAAATTTAGCACTCTTATGGAAATATGATAATATTTTGTAATTATCATTTAAATCAGATTAATTTTTAAATTGTTTGTTATAAATCAACATCTCAGGAAAATGCTATGGGGTTTCTAATCAAAATATGACTTTCTGTTACAAAACAAGGCATTGATTTCATACATGTAAACTGTAGAGGACATCAGGACTTAAATCATGATTATCAGGCATTTTGGGAGACACAACAAGTGAATAGCGAAATAAATTATATATTCCTATTAATTATTAGATATTATTATGAAAATGTTGCCAATTTTTACTCCCATTATTACATTTTTTTCATTACATGTTACTCCAAGAACACATTAATACAGTGTATAGATGCATTGTATTGAATGGGAAAACCCATGTATGGCCATTTTACCCACATATTGCATAAAGTAAAATGGTATATCGATTCATTCCGTTACACAATATTTAGTTAAAAAAAAAAATCCTGAAACCAAAAAATTGATTGGTGAATAAAAAAAAAATAAAAAAATCCATTGTTTTTGCCTAAACATCTAATTTCATGTCATTTTATTTTTTTTAAACAACTTAGTCCTGGTTTCCACTACAGAGGACATAGCATAAAATATAATTTTTCAAAAATTTTATTTTTCCATTTTTTTTCTTATGCTCTAAACAATGTAATGATGTGAAAAAAAACATTCCAAAACTATTTTTTTCTGAGTCCCAGGAGGATAGATTTGAAAAATGCTTCTTCTTCTTCTTTTTTTTTTCTTCTTTTTTTATGCCCTAAATTTCTTTATCTGTTCTAGATCATGGAGATCACATCTCAACCTGCTGCATTTGAACCCCAAGAGTTTCAAACAGGCTTAATGGGCTGCTGTGAAGACGTGGGCGTATGTTGTTGTGGCCTCTTCTGCCTCCCTTGTTTGGGCTGTTCCATTGCTTCCGACATGAATGAGTGCTGCTTATGCGGTTTAGGCATGCCGATCCGAAGTGTTTACCGAACTAAACACAACATACAAGGTTCCATGTGTAAAGACTGGTTAATCTCGAACTGCTGCTTTACTTGTGCAGCCTGTCAGCTGAAGAGAGACATCAACATAAGGAAGAGTAATGGAACACTGAAACCATGAGAACTTCAGTTCATGAGAGTTTCAGAGCACCGCTTTCTAGATGACTGTCTACACTACCAGCGAATCCTTGTGTATTGCTCTTGGAAACTAAAGATAAAGGAAAATTAAAAGAGTTAATTATTTAGTACATAATGAAAATGTCTTAAAAATAAAAGTTCCAAAAGGCAGTTTTCACAGCAATGCAGTATAAAATATAGTTTTGGTTCCACAAAGAAGCTTTTTACGTGAACAGTTTTTAACCCCTTAGCATTCAAAAAGAGACCTTAGGAATGCTAATGGGTTAAAAGAACATTTTTTTTTCTTTGTGTGAAGAACATTTTAATAATGTAAAGAACCTTTTTCCAGTGTAAAGAAAAATGTAAAGGTTCCACAGATACACAAAGAGTATGTCTTTGCTGCTTTGCTTAAGGAGCTGACTTAGTATTTAGTATGCTAATATGTATATGGCTTGTTAACAGCTTGTTATAATTCAGTGATGTA

Function

symbol description
plac8.1 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is expressed in gut. Orthologous to human PLAC8 (placenta associated 8).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04866074_04866590.mRNA True 1889 mRNA 0.32 3 4864986 4867070

Neighbor

gene id symbol gene type direction distance location
CI01000304_04708075_04768393 ADAMTS6 coding upstream 96405 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 159044 4687431 ~ 4705942 (+)
CI01000304_04679406_04680031 NA coding upstream 184949 4679300 ~ 4680037 (+)
CI01000304_04650911_04659754 TRIM23 coding upstream 204530 4650911 ~ 4660456 (+)
CI01000304_04563922_04573450 NA coding upstream 291536 4563709 ~ 4573450 (+)
CI01000304_04876496_04883240 NA coding downstream 9266 4876336 ~ 4883702 (+)
CI01000304_04902333_04911640 LIN54 coding downstream 33145 4900215 ~ 4911778 (+)
CI01000304_04989817_04997932 NA coding downstream 121292 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 218526 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 255535 5122605 ~ 5138169 (+)
G420615 NA non-coding upstream 1127 4863383 ~ 4863859 (+)
G420694 NA non-coding upstream 56929 4807858 ~ 4808057 (+)
G420693 NA non-coding upstream 57142 4807364 ~ 4807844 (+)
G420692 NA non-coding upstream 57767 4806806 ~ 4807219 (+)
G420690 NA non-coding upstream 62584 4802179 ~ 4802402 (+)
G420728 NA non-coding downstream 4157 4871227 ~ 4873291 (+)
G420542 NA non-coding downstream 49065 4916135 ~ 4916905 (+)
G420543 NA non-coding downstream 52301 4919371 ~ 4922423 (+)
G420561 NA non-coding downstream 57139 4924209 ~ 4924509 (+)
G420735 NA non-coding downstream 59218 4926288 ~ 4926510 (+)
G420445 NA other upstream 561154 4303336 ~ 4303832 (+)
G418981 NA other upstream 2771308 2092494 ~ 2093678 (+)
G418116 NA other upstream 3989737 872670 ~ 875249 (+)
G418059 NA other upstream 4300535 558092 ~ 564451 (+)
G417987 NA other upstream 4637133 226703 ~ 227853 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 306153 5173426 ~ 5176791 (+)
G421162 NA other downstream 1374163 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2485579 7352621 ~ 7354396 (+)
G421435 NA other downstream 2617071 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3111558 7979078 ~ 7980735 (+)

Expression


Co-expression Network