CI01000304_04902333_04911640 (LIN54)


Basic Information

Item Value
gene id CI01000304_04902333_04911640
gene name LIN54
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4900215 ~ 4911778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04902333_04911640.mRNA
GCATAAAAGTGTTGTTTTAGTGCGGCTGTTTAAACCACAATATCTTAAGTAGACAACTGCTGTTATTATTTGCAGATGGTCAGATTTATGGCTAGTTAATGTTAGCTGTGACAGCTGTTCTTAACATGTAACTGTGCGTTAACTGCTGGTTAGCTCCTGTGCTAGTTAGCCACATAGCAGCTGAGCATAAACAGCTCCTCTACACTGCACGCGACGCGATGAACGCCGTCAACAGTGGAGACTGTGGGTGATTGGAATGGGAGCGGTCCGGTCGCGTCGCTCGCAGTGTGTACAGCGTTTAATAAACATGGGGATTTGAATGGCCCGCCAGCTGACTGTAGCAGAGTATGTGTGACATAACTATTAGTGCTGGATGTACTTGATACGATGAGATCTGTTCTATATATTTTGTACAATGTATTTTTTATTCCAAAGTGCTGCAGGCTTTATGTGTGGATATTGTAATGTAATGCCATGTGTATATTATTAACAAACTTGGTCATTGTTGTTCCCACTACAGTACTTTTCAGTTTTCATAAATGCTGTCTAGACTGTGTATAAGGCTGAAGTGGTAATGTTTATTATTACATGCACAGCAAAAAAAAAAAAAAAAAAAAAGGCCTTGGTGCTAGGAAATTCAGTGGGCTTTTTCCACTTTTTTTTAAAACGTAGACCTGAATGTAAATTATTGTCTGGTTTCACAGACAGGGCTTAGATTAAGCCAGAATTAGGCCTTAGTTCAATTATGATATTTACAATTACCTTTTATGAATGTGCCTTAGAGAAAAAACTACTGGTGTGCATCTTGAGACAAAACAATGGCACTGACATATTTTAAGATGTGTCAGTGCAATTTGCTTTGCACTGACAAAACTGCTCAAACATTGCATTTTAGTCTGGGACTAGCTTAAGCCTTGTCTGTGAAACCTGGGGCATGATTATTACTATTTTAGTTTCATTTTTTTTTAATGAGTTGTAGTTCACCCCCAAAAAGTTAAACATGGCTCCATCCAACAAACCCTGTGATTTCAGGGATATTTAAAATTTTGTTTTCCATACCCAGAAAAGTCATTGGAATTAATGAAGTCTTGTATAGTCATGGAAATTTTTGTAGTGCAGTTTTCTGTTTACACCCAGCTCTAAAATATATAGATACTGTTTTTGTGTTGAGTGAAACTTGCTTGAAAGCCATAATTATGTTCAATTTGTGAGAAACTTTGTCAGTCACTTTTTTTTATTTTCTTCTTCAATGAATCCATCAAGTGGTTCACCAAATATTCAGAATTATTCTGCATTCAATATAGGCAATATTCAACTGGAGTGAGTGAGTGAGAGGAGGCGGGTGTGTGTCAATTCGCTGTCGGAGAGAAGAGAGAATGAGAATGTGCAGCTGTATCTGTGTATCAGTACTGCAGAAAAAGAGGATTGGAACGATTTCAGATATTTCATTAGCGATATCGAAAATATACACTATACTATAACACTATAATAGCCTATTTATGATCCCTACTAGGGATGCTAATGATTAATCGATCGATTAATTGCCAATAATAATTAAATCAATAAACTTATCAATAGTCGATTAATGCCACAATAAAAGTAAATAGAATAAATGAGTAATAAGATCAATTAATTGATCATTATTTTATGATTGATTATGGGAATTCATGTAAATTGACATCCCTAATCCCTGCACAAGCTGCTTCCACAAGCTACAGTACTGCTTGAAAGTTTGTGGTCAGTTAGAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAGAAAGAAATCGCTCATTTTATTCTTTAGACTTTTACATTGTCACAAAATATTTCAAATAAATACAGTTCTTTTGAACTTTCTATTCATCAAATAATCCTTAAATGTATCAGATTTTAAAATGGTAAAATAGAAAACAACTATTTTAAATTGTAATGATAGTTCATCAAATTAATATTTTACTTTATTTTTAAGTTGAATAAATGCTGCATTGGTGAGCAGAAGAGACTTCTTTCAAAAACTGTAAAGATCTTACTGCCTCCAANTTTTTTTCCCCCCCCCCCCCCCCCTAGTGTGTTTTCATTATCTTTGTACACGATGGATGTGGTGTCGCCTGAGCTCAACAGCCTCCTGCCTGATGAGATTATGGATACGGAAGCTATCGCGATGGAAGAGGAACTCCCCGCTGATCACCTTGCTCTTCCTCCTCCCCAATCTGAACCAGAGCCAGCGCAGGTTCCTATGGAAACAGAGGTGCCTGAAATCGTCAGCCTGTGTCCAGCCACCACGTCTATGCAGATGAGCTCCACCTCCACTGATGCTCAGTCCAACCACCAGCTCATCATCAACAAAGTGGCCAGTTCCCCTGCTGCAGATGGCAAACCTCCAGGCTCTGCTGTGCTCAAGCCAGAGGGCCAAAAACTCTTGGTTGCTGGCCTCAGTAAAACAGGGCAGCCCATTATGTTGGCTCTGCCCCACACTTGGAACAAGCCCGCCACTACCCAGGGCGCAGGGGATGCCAAGGCCCAGCCGACGCAGATCAAAATGGTGACTGCAGTAGGGAAGCCTGTGATAGCTGTGAGCTCAGCCAGTCAGCTGATGGGCTCCTCCACAACACTGCAGGCCCAGCAGCTGAAGACACTTCAGATCACAAAGAAACCACCAGTATCTACGGCTGGACCAATGATTACAAAGCTCATCATCACAAAGGCCCTGAACAATAAAGGACTGGCCAGCCCAGCTTCAGTGGCTCCTGTAGTTACTGGGCGAGTTGTTACCCAGAGTACCCCGGTGACACCTCCACGCACCATTGCCATTGGCGAGACCGTCAGCACTGTGCCACAGAATACATCTGGTAACAGCAAAGTCGCCATCTCGCCTCTCAAGTCTCCCAGCAAGGTCTCAAATCTTTTAAAACTGACTGTGGTTTCGGTGGCCAGTCAGTCTCCAAACTCACCCCAGAAGTCTGTGACGCTGCCGCTCAATGTGGCTCTAGGCCAGCAGATCCTCACTGTTCAACAGTCTGCCACCACTTCTCCAGCTAAAGCAGGAACCAGCCAGTCCGCCGCACAGGCTGTAAAGCCAGTGCAGACGGTTACGGTGGGAGGGGTGGGAACATCCCAGTTTAAGACCATCATCCCCCTCACCACACCTCCCAACGTGCAGCAGATCCAGGTGCCGGGCAGTCGCTTCCATTATGTGCGGCTGGTAACGGCCACCACCGGCAGCAGCACCGCACAGACGGGCGCCAGCACCAACACCAACCCTTCCATCCAACCAGCCAAGCCTGTGATGATGAATGCTGCGGTGCGGATGTCTGTACCCATCGTCCCAGCACAGACCGTGAAACAGGTTGTACCCAAACCCTTGACGTCAGCAGCTCAGGTGGTGACCACCAGTCAGACCCCCCAGCGTCTCATCATGCCAGCCACACATCTGCCACAGATCCAGCCTAACCTCACCAACCTGCCGCCTGGCACTGTGCTCGCCCCCGCCCACGGCTCTGGAAACATGGGCTACGCTGTGTTGCCAGCCCCATACGTTACGCAGCTCCCCCAGCCTGCATTTGTGACTTTGACCAGCAGCTCCACCTTCTCAACAGCCACTCCCATACAGACTCAAGCCAGGCTTTCACTCAATGGGTATTGTGATTGCTTTGCCAATGGGGAGTTCTGTAATAACTGTAACTGTGTTAACTGCTTCAACAACCTTGATCATGAGAGTGAAAGACTGAAGGCCATCAAGGCGTGTTTAGACAGAAACCCTGTAGCTTTTAAGCCCAAGATTGGTAAAGGCAAAGAAGGAGAGTCGGACAGGAGACACAGCAAAGGCTGCAATTGTAAGAAATCTGGCTGTCTGAAAAACTACTGCGAGTGTTATGAGGCAAAGATCATGTGTTCGTCCATCTGCAAATGTATGGGCTGCAAGAACTTTGAGGAGAGTCCTGAGAGGAAGACGCTGATGCACCTGGCCGACGCTGCAGAGGTGCGGGTCCAGCAGCAAACTGCAGCCAAAACCAAGCTTTCCTCACAGATCTCAGATCTGCTCACCAGAACCACACCAGCCATCACTAGTGGAGGCGGAAAGTTGCCATACACATTCGTAACAAAGGAAGTGGCTGAAGCGACATGTGACTGTTTGCTGGAGCAGGCCGAGCAGGCGGAACTGGCCAACCAGCCTCAGGCCGTGGCAGAGCGCCTCATTCTGGAGGAGTTTGGGCGCTGCCTCAGGAGAATCATCAGTTTTGCTGGCAAAGCCAAGACAGACTGTCCCATCAACTGCTAGACCTGGGCCTGGCAAAGCCATGACTGAGAGCCCTTCCGCCCGTTTGGGCCCTGCGGCCCATTGTGCTGCTGAACCTAGAGTCGGGGCCCACTGAGGGCACTTCTGTCGGCCCCTCATATGGACACACAGGGCCTTCTA

Function

symbol description
lin54 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human LIN54 (lin-54 DREAM MuvB core complex component).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04902333_04911640.mRNA True 4443 mRNA 0.45 13 4900215 4911778

Neighbor

gene id symbol gene type direction distance location
CI01000304_04876496_04883240 NA coding upstream 16513 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 33145 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 131634 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 194273 4687431 ~ 4705942 (+)
CI01000304_04679406_04680031 NA coding upstream 220178 4679300 ~ 4680037 (+)
CI01000304_04989817_04997932 NA coding downstream 76584 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 173818 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 210827 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 236919 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 261899 5173426 ~ 5176791 (+)
G420728 NA non-coding upstream 26924 4871227 ~ 4873291 (+)
G420615 NA non-coding upstream 36356 4863383 ~ 4863859 (+)
G420694 NA non-coding upstream 92158 4807858 ~ 4808057 (+)
G420693 NA non-coding upstream 92371 4807364 ~ 4807844 (+)
G420692 NA non-coding upstream 92996 4806806 ~ 4807219 (+)
G420542 NA non-coding downstream 4357 4916135 ~ 4916905 (+)
G420543 NA non-coding downstream 7593 4919371 ~ 4922423 (+)
G420561 NA non-coding downstream 12431 4924209 ~ 4924509 (+)
G420735 NA non-coding downstream 14510 4926288 ~ 4926510 (+)
G420736 NA non-coding downstream 14937 4926715 ~ 4927094 (+)
G420445 NA other upstream 596383 4303336 ~ 4303832 (+)
G418981 NA other upstream 2806537 2092494 ~ 2093678 (+)
G418116 NA other upstream 4024966 872670 ~ 875249 (+)
G418059 NA other upstream 4335764 558092 ~ 564451 (+)
G417987 NA other upstream 4672362 226703 ~ 227853 (+)
G421162 NA other downstream 1329455 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2440871 7352621 ~ 7354396 (+)
G421435 NA other downstream 2572363 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3066850 7979078 ~ 7980735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location