CI01000304_04989817_04997932


Basic Information

Item Value
gene id CI01000304_04989817_04997932
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4988362 ~ 4997932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04989817_04997932.mRNA
GCATATAGGACACGATCCTTGTGTTCCAGCACATCAAGCATATGAGAGCCCAAAGGCTCAGAGTCGTTGCACCTTGGCAAACACATGCACACTTGATTGCTGTCTACTGGGACCACTCTGCCAGAACAATACAAAAGCATTTCTGCCCTGTCAAACCTGACATACTCCTTCTTGCCCCAGGCAAAGTTGACAGTACAGCCCATAACCATGAGTTAAAGCTGATCGGACATGTTTTAGTGGGGTCCGGGTGTGTGTATGAGTGCAACCAGCCTTTATCAAACTGAAGACTACTCTGTTCTTACCCTAGTACATGATGGATCATAAATGTTCCAAGAATTGTGGTTGTTTGTAAGATGACAGTGACAAAGCAACAGACAGGTGGAACAGCGCAAAGGTAATACTTGCGGTAAAGGTGGCATTTCAGGAATGTCAGATATGGGAATTGTTGACGGGAAGTCACAGAGAGCTCGGTTGTGAGCAGCATTCCGCAAATTCTGTGGTGTCCTAGCAACAGTTTTACTGTAGTGGGATTTCACAGTGCATCGCTGAATTAGCTGTGACAGCAAGGATAAGATTCTTCTCTAGTCTCTTGGGTGATGCATAGACAAATATCACGGAAAACGGATGCTTTCTACAAATGGATAATGCTGCTTCAGTGCTGCAGAAATCCTTTGATTTGCAGAACAACTTCCTCATCCTGTATTGGCTTTGTTTGTTGTACAAACATAAGTTTAATATTTGCCTACTATTTTGGAGTTGTTTGTATTACTCCAGACTTTAGCATCACATGATCCTTCAGAAACTATTCTAATATGCAGATTTGCTGCTCAAGAATTTTTTTTTTTTTTATATCAAGGTTGAAAAGTGAAACGGTGTACATTTTGAGTTCAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGTAACATTATAAATGTCTTTATTGTCACTTTTGATCAGTTTAATGCATCTTTTTTTCTTTCAAAAAAGAGTAGTGTACACAAAATGTGTGCTTCTCGTCTACCATTAATGAACATTCAAATATGTGATAAAATCATGGATCAGAGTTCATAAATCATAACATTATCAAGTTTCATAAATCTACATTAAAAGAATGGTTCAGCCAACTGTGTGAACTATTCCTTTTGCTAAATCTGTTCAACTTTATATAATATTTATTAATGTCATTTCTTGCCTACAAAATGATTTAGCAAAGTTTGTAAAGGAGAATTATTTAAAACTTTGGTATTCTTAAATAATGTAGGAAATCTATCTAGATTTGCTAGCACAAACCATCTCATGCACTGAGTTTATGTATTGCCAGTGAATTTCAAAGATCCTTTTTACTCATTTCCTCTTGAAAAGCCTGTGGCATATTCGATTCAGGGATGGTTCCTCTAATCACATTAAATGCACAATAAGATTTGTTAACGACACAATGAGATGAATTGGCATGGCGAAGCCAGATGCCTTGATAGGTCATGTGTATGGTCACCATGCTAATGGCACTGACAGTAAAAACTATAAAGGAGACCGATCTCCCTGTGTCCCCTCCCGTGTCCTCCACGTCCGCAAAGTTCCCATTGAAGTGTCTGAAGCAGAGGTCGTCTCACTAGGAGTACCTTTTGGCAGAGTCACCAACCTGTTGATGCTTAAAGGGAAAAACCAAGTAGGTGCTCCATTAACCTGTGAACACATCTCTGCCCTATCTTTCAGCTCTGCTTTTATAGAAATGGCTTCTGAAGAAGCAGCCATCACCATGGTCAACTACTACACCACAGCCACACCCCATGTCCGCAACCAGCCCGTCTACATCCAGTATTCCAACCACCGTGAGCTCAAGACTGATAATCTGCCCAATCAGGGGAGGGCTCAGGCTGCTTTGCAAGCTGTCAATGCAGTGCATTCTGGGAATATGAGTCTCTCCGGGACTGCGACAGCCAGTGATGGCGGAATGATGCCTGGACAAAGTCCTGTGCTTCGCATCATCGTAGAGAATCTCTACTACCCAGTGTCTCTAGAAGTGCTACACCAGATCTTCTCAAAATTTGGAACGGTCCTGAAGATCATTACCTTCACCAAGAACAACCAGTTCCAGGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04989817_04997932.mRNA True 2148 mRNA 0.41 5 4988362 4997932

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 76584 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 104660 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 121292 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 219781 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 282420 4687431 ~ 4705942 (+)
CI01000304_05085761_05095609 AK3 coding downstream 87664 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 124673 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 150765 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 175745 5173426 ~ 5176791 (+)
CI01000304_05277392_05292162 DBH coding downstream 279169 5277101 ~ 5292162 (+)
G420544 NA non-coding upstream 44843 4940767 ~ 4943519 (+)
G420548 NA non-coding upstream 56247 4931127 ~ 4932115 (+)
G420739 NA non-coding upstream 58805 4929289 ~ 4929557 (+)
G420738 NA non-coding upstream 59422 4928423 ~ 4928940 (+)
G420737 NA non-coding upstream 60056 4927904 ~ 4928306 (+)
G420746 NA non-coding downstream 38463 5036395 ~ 5036620 (+)
G420747 NA non-coding downstream 38764 5036696 ~ 5037056 (+)
G420530 NA non-coding downstream 39439 5037371 ~ 5038662 (+)
G420600 NA non-coding downstream 69612 5067544 ~ 5078275 (+)
G420517 NA non-coding downstream 192672 5190604 ~ 5197784 (+)
G420445 NA other upstream 684530 4303336 ~ 4303832 (+)
G418981 NA other upstream 2894684 2092494 ~ 2093678 (+)
G418116 NA other upstream 4113113 872670 ~ 875249 (+)
G418059 NA other upstream 4423911 558092 ~ 564451 (+)
G417987 NA other upstream 4760509 226703 ~ 227853 (+)
G421162 NA other downstream 1243301 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2354717 7352621 ~ 7354396 (+)
G421435 NA other downstream 2486209 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2980696 7979078 ~ 7980735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002630 ptbp3 coding NC_007121.7 CM002894.2 11146321 ~ 11261565 (-)