CI01000304_05149465_05165999


Basic Information

Item Value
gene id CI01000304_05149465_05165999
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5148697 ~ 5166172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_05149465_05165999.mRNA
CTATAAAGGGCATCTCTGGAGGTCACCCAGTCACGATACTGTTGGTAACTAGTTGGCGTTCATACACAACTGCAGTATCCTACTGTAACAGATGATTTGTGCTTCATTATCTTCAGTCACACCATCACAAACTTTGTTGTATCTGCAACTATTGCTGTTGTCAAATTGCCACAATCAATCACCCTATTGTACTTACATGAAAAATTGTGTGAATGCCTGTTAAAGCACTGTTTGAACAGAGCAAACTCTAACCATCTATAACACACAACCAGAAGTTCATCTATCTGCGAAAGTAGTCCCATTTGAAAATTATGATTTGCAACTTTACAACTTAGCAACTCAAATGTTTCCACAGAAGAGTTTGCGTAAATACAAGCTTAACGTATGAGCTTTTTAAGCCTCTGATTTGGCCATAGACCTTGTCTATAGACTTAACACATCGACTCCCAGAAGTTCATTTTAACACATCAGTTAAAAACTCACAGCTTGCCAGTAAATGAGCTCTGCATTCGGTCGCCTTGTGAGAGAGTGTTCTGTTACGCCAAATGCTCCCCCCACAACCAGAAATCCTTTATTTTTTTCATTGTCCACCATGCGAAAAACTTAAGTCTGATCAATTAGAAAAGTAATAGCACCTCTCCCCAACAAGCTGCATGACTTGAGGTATCATTCATGCCATGGGACGAATAATGCATAACTCTTAGGGGATTGCCGAAATCAGTAACTGTAAGTATGAATAATAATAAAAGTGCTGCTTGCTTTATCAAAATGAGAGTTGATGAATGTCTGAGAAAAGAACACAAAGGAGAAAGATACAGTGAACATAAGACACACACAAAGGAAGAAGAGGGGGAATTCTTCCCAACTAATAGTGGTTTGCCTAGCGTCAATGGAAATGCTGTTGGACTTGATGGATTCTTTTTGCATGGCTGGTCTTTGCACTTTGCAGAGTGTAGATGTCTCTCTGAAATGGGCCCCCCAAGTGAAGCCTGTCACTTCAGCTTTCGGGCTTGGGAATGGGGGTCAACAGAGGCTGGCAGTGCTTCCTCTGTGTCTGATCCTGCTGATGTTATCGAGGGTTGGAAGTCTGTTTGCTTTGGGAGTGCTGGGCAGTTAGGGGTGGGAAGGGTCGAAGAGCAGCCCCCCCGTGGGACAGTCGAGGTATACGGACACTGGGTCTTTTCTTCGCTGTCTATTTTGGTGAGCCGGGCCGGTCCAGCCGGTTCCCACAGAGTGGTTCCCATGGTTATCGGCGAGGAGATAGCGTCAAGGATGGAGGATGATTGGGATGGGGGGAGTTTGATATTGTTGCCACCTTTGTGTCACTTTGACACAGCTATGTGGTATACGTGTTATGTCGCTGAGATCAATCTAGACCTTTTTTGCACATGGCCGACAGTAGTTAAATCTATGTTAGGTCAACGAAAGCAGAGCTCCAGTCTCAAACCAACCCCCCTCATCCAGAGCTGCCAAGAAACTTTTCTGGGCTTGAGCTGTTCCAAGACCAACAGGGGAGAATTTTCTGAACACATGTATGTTATTAGAAAAAGAGAGAAGTGTCAGAACAGTTTGCTTGCCGACTGCATCCTGTCCAACTGTCTGGTGTCCCATTTAGCATGTCTCAGCCTGGGTGGTGTTGCTGAGGTGGAGATGGCATTTAGTGACAAGGCTTTTAGCGCCCATGTGTTGTTTGAAAGGGCTTGCAACTGTAATGAGTACTTCAAGCTGTCCAGAGAGGATATGACACGCATGATGAAAGAGAGAGGTCTTCTTCAAGACATCGTATCTAAGCGGGATGACTGCGAACCGCAGGATGAAACACAAGAAGATTACAATAGCTGGAGGCCCCCAGAGGGCCCAGAGTTCACCCCTCATTGCCGCTGGGCCCCACTCACTGCCCTGGACCCCCAGACCTTCAAATTCCCCAGTGGGGCCGAAGTTCAGCTCGAGACGGTGCCCCCAGGCCTCCTTCCCCGGATTCCAGTTTACTTCATCTGCACTGGCTGTGGAAAGGTGTTCTGGGAGGGGACCCACTATGACCGGGTGCTGTCGCAGTTCCAAAAGGTCCTACATGTCAGTAAAGACCTGGCAACAAAAGCATGAGATCGACCAGGAGAGATTCCAGATGTAACAAACTCTTGCTCTTGCTGTTGTTTTGCAACTTTTTTTTTTTTTTTTTTTTTTTTCCCCATACCTCAGATTTTTAAAAATTCTTTTTATGGTGGTATTTTTATTTGCTACACTGTGTCATGATAACTGTGCAAAAGCATCATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_05149465_05165999.mRNA True 2276 mRNA 0.45 9 5148697 5166172

Neighbor

gene id symbol gene type direction distance location
CI01000304_05122605_05137890 EXD3 coding upstream 10528 5122605 ~ 5138169 (+)
CI01000304_05085761_05095609 AK3 coding upstream 52446 5085596 ~ 5096251 (+)
CI01000304_04989817_04997932 NA coding upstream 150765 4988362 ~ 4997932 (+)
CI01000304_04902333_04911640 LIN54 coding upstream 236919 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 264995 4876336 ~ 4883702 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 7505 5173426 ~ 5176791 (+)
CI01000304_05277392_05292162 DBH coding downstream 110929 5277101 ~ 5292162 (+)
CI01000304_05394708_05400373 NA coding downstream 227680 5393852 ~ 5400616 (+)
CI01000304_05489571_05504308 NA coding downstream 323353 5489525 ~ 5508080 (+)
CI01000304_05541965_05547732 NA coding downstream 375366 5541538 ~ 5547877 (+)
G420600 NA non-coding upstream 70422 5067544 ~ 5078275 (+)
G420530 NA non-coding upstream 110035 5037371 ~ 5038662 (+)
G420747 NA non-coding upstream 111641 5036696 ~ 5037056 (+)
G420746 NA non-coding upstream 112077 5036395 ~ 5036620 (+)
G420544 NA non-coding upstream 205178 4940767 ~ 4943519 (+)
G420517 NA non-coding downstream 24432 5190604 ~ 5197784 (+)
G420538 NA non-coding downstream 36100 5202272 ~ 5206967 (+)
G420785 NA non-coding downstream 41138 5207310 ~ 5207655 (+)
G420786 NA non-coding downstream 41531 5207703 ~ 5207923 (+)
G420787 NA non-coding downstream 42602 5208774 ~ 5209519 (+)
G420445 NA other upstream 844865 4303336 ~ 4303832 (+)
G418981 NA other upstream 3055019 2092494 ~ 2093678 (+)
G418116 NA other upstream 4273448 872670 ~ 875249 (+)
G418059 NA other upstream 4584246 558092 ~ 564451 (+)
G417987 NA other upstream 4920844 226703 ~ 227853 (+)
G421162 NA other downstream 1075061 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2186477 7352621 ~ 7354396 (+)
G421435 NA other downstream 2317969 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2812456 7979078 ~ 7980735 (+)

Expression


Co-expression Network