CI01000304_05410915_05460560 (SH2D3CA)


Basic Information

Item Value
gene id CI01000304_05410915_05460560
gene name SH2D3CA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5410915 ~ 5460560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_05410915_05460560.mRNA
ATGTTTTCTCCTTTCTCAGGCTTCAAGTGGTTTGGTAGTCTCACCAACCTCAGGCGGAAATCAGATGCCCAGAAGGACGATGAAGCAATCAAAGAAATGTCCGCTGACGATATGGGCATGAATCCACGGAGCCAGAACTATGCCAGCTCCAGTGAAATGTACACGCACATGGGCACCATGCCGCGTCACTCGAAGAAGGACAAAAGCTTGAAGAAGAGCAAGTCCAAGGACAAGAACACCGTCAGTCAGAGTCAAAGCGTGAGACCTGCACAAGACCATGTAGTTGATTCACCCCTTCTCAGCGTACTCCAGGGCCTGGAGGTCCTGGAACACCCCATTATAGAGGACAAACCAAGTGCTGGGACCAAAGATAGTCGCATCCAGAATCGTGACCTTCCACTACCACCAACTGTGGATGGACACTCAACAAAGCTGGAAGATGAACATAAGGAGCCTGTAGTTGTCTCCAAGCTACATGTTGATCCAACGAGTGCATATCTAGAACCTTCACCAGATCTGTGTCTGAGCGAAGAGTTAACGGTCCAGCCAGTGCTGCCCAAGAAAAAACATAAAGAAGAAGATGCCTCCCTGAAAGGTGCTGAGAAGCTCCAGGTGGACAGTAACTTGATTCAGTTGCCTCTGAAGATGAGCAGCCAGATGGAGCAGAAGACAGAAGTAGAAGAAGATGCTAATATAGAATCAGACTGTAAACAAGACAGTCAGGAAAAGATGGAGCCTAACAGACAGCTGGACACCACAAACAACAAAGGAGAATATGTGGAATTCTCCAAGGAGAAGTACCTGCTGGAGTCACCCCCGGAGAAACTCAGGAAGGAGCTCGAGGAGGAACTCAAACTTAGTAGCAGTGACATGAGGAGCCATGGCTGGTACCATGGCCATATTCCACAAGAGGCTTCAGAAACTTTGGTTCTACGTAGCGGCGACTTCCTCGTACGGGACTCCCTGTCGACCGTGGGCGACTATGTCCTCACGTGTCGCTGGCAGCAGGAAGTGATTCACTGTCGGATCAGTAAAGTCCTGGTCAAAAGTGGACAAACCAAAATCCAGTACATGCTGGAGCATGAGAGCTTCGACTCTGTCCCCACACTGGTCAGGCACCATGCTGGCACGGGTCGACCCGTGTGCCCACGTACCGGAGCCCAACTGCTGTGTCCGGTCAACCGAACGCTGCCGCTAAGGTACCTGGAAGCGACGTTTGCTTTAGCTGGTGGGAGACCAGGATCTGCACATTCACCATCAGCCCAGAGGGGGGCGCACATCAAGAGACGTAGTGTTACTATGACAGATGGACTGACGACAGAGAAGTTAATTCCTCACAGCCCCTCTACAGTGCACCATAAGGATGCCATGAGGAACTGCGCCATGAGCATGGATCAGATCCAAGAGTACCGCTGCCCGCTGTCCCCTGTGGGGGAAGCACCTCTATCCCCTGCCTACAGCTCCATTTCCCGCCACAGACATGGCTCAGGTGGGCGTGTCCTCGCTGTGATCCCGCCTTCTCCAGTGATGCGGCGCTCTAGCGATCCCCATCTCTCGCCATCCTCCTCCAATAACAACCTTCCCTGCTCAGACACGCCCCTTAGCACTCACTCCACGCCTGCCCACGGTTACCCATCCGAGAGTTCAGAGCAAGGCGGCAGCTACTGTGAGCTGAGACCCGGACAAGCCCCCACTCCCACCTGCAAGAGCTATGTAGAGAGGCTGAGGGTGGAGGAGGGCCAAAGCCCGGGCTCTGGAGCTCAAGATGGGGTGGAGGGCTTCATGCTCCCCCTGGTGGAGACCAGCTCCTCCTTCAAGCCTGGGAAATACCAGTCGACTCTTCTGCCAGCTGAGAATAAACCTCTAGAGATGAGCGTGTTGAAGAGGGTGAAGGAGCTGCTGGCGGAGGTGGATCCCAAAACAGCCGCCAAGCACATTACCAAGGCCGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAGAGGATGATGGGAGTGAGCTCGGGGCTGGAGTTGCTGACTCTTCCGCATGGACACCAGCTGAGGCTGGATCTGCTGGAGAGGTTTTACACCATGTCTATAATGATGGCGGTTGACTTGTTGGGTTGTACGGGCAGCACAGAGGAGAGAGCCGCCCTCCTGCATAAAACCATCCAGCTGGCTGCTGAACTCAAGAGCAACATGGGCAACATGTACGGATTCGCTGCGGTCATGAGAGCCCTGGAGCTGCCGCAGATCTCACGGCTGGAGCAGACGTGGATAACACTGCGACAGAGACACACAGAAGGGGCCATCCTCTATGAGAAGAAACTCAAGCCATTCCTGAAGGCTATGAATGATGGGAAAGAGACCTGTGTCCTCTCCAACACCTCTTTCCCTCACGTGGTGCCGGTGTTGTCCCTGCTGGAGCGCGGTGTGGCGGCAGGGGAAGCGCTGGAGTCATGGGAGAGTGTGGAGTCTGGTGTGGACGTGGTCATGAGTCACCTGGAGGCAGCGCGCACCATCGCTCACCACGGAGGACTGTACCGCACCAACACTGAGAGCAAACTACAGGATTTCCAAGAGCGGAAGGAGATTCTGGAAATCTTCTGTACAGAGTTTCAGATGAGGCTTTTATGGGGCAGCCGTGGCTCGGAAGGAAGTCAGGCCGAGCGCTATGAGAAGTTTGACAAGGTCCTCACCGCTCTGTCTCACAAGCTAGAACCTCCTGTACGACACAGTGAATTA

Function

symbol description
sh2d3ca Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human SH2D3C (SH2 domain containing 3C).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_05410915_05460560.mRNA True 2736 mRNA 0.54 11 5410915 5460560

Neighbor

gene id symbol gene type direction distance location
CI01000304_05389793_05390092 NA coding downstream 20237 5389439 ~ 5390678 (-)
CI01000304_05363977_05376993 CERCAM coding downstream 33393 5362826 ~ 5377522 (-)
CI01000304_05295266_05357773 SARDH coding downstream 52919 5294886 ~ 5357996 (-)
CI01000304_05244209_05247428 FAM163B coding downstream 163487 5243884 ~ 5247428 (-)
CI01000304_05231085_05231758 NA coding downstream 177162 5230538 ~ 5233753 (-)
CI01000304_05516992_05525104 NA coding upstream 55204 5515764 ~ 5525413 (-)
CI01000304_05550395_05551030 NA coding upstream 89769 5550329 ~ 5551199 (-)
CI01000304_05620621_05623140 NA coding upstream 159790 5620350 ~ 5623797 (-)
CI01000304_05639043_05676092 GPR21 coding upstream 177518 5638078 ~ 5676391 (-)
CI01000304_05676697_05705653 NA coding upstream 216073 5676633 ~ 5706860 (-)
G422015 NA non-coding downstream 5452 5405245 ~ 5405463 (-)
G422014 NA non-coding downstream 17435 5392984 ~ 5393480 (-)
G422013 NA non-coding downstream 17976 5392411 ~ 5392939 (-)
G421993 NA non-coding downstream 33128 5377564 ~ 5377787 (-)
G422020 NA non-coding upstream 18554 5479114 ~ 5479325 (-)
G422033 NA non-coding upstream 54193 5514753 ~ 5514969 (-)
G422054 NA non-coding upstream 77187 5537747 ~ 5539200 (-)
G422128 NA non-coding upstream 431747 5892307 ~ 5892587 (-)
G422133 NA non-coding upstream 447090 5907650 ~ 5911050 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 737968 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 1145714 4263846 ~ 4265201 (-)
G419354 NA other downstream 3144674 2262502 ~ 2266241 (-)
G419353 NA other downstream 3174809 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 1016891 6480743 ~ 6483986 (-)
G422354 NA other upstream 1170526 6631086 ~ 6631499 (-)
G422378 NA other upstream 1284119 6744679 ~ 6783046 (-)
G422810 NA other upstream 2169599 7630159 ~ 7652703 (-)
G423386 NA other upstream 3401663 8862223 ~ 8865296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001942 sh2d3ca coding NC_007121.7 CM002894.2 10210455 ~ 10274162 (+)
bowfin (Amia calva) AMCG00020119 NA coding CM030127.1 CM030127.1 10454027 ~ 10467852 (+)