CI01000304_05985483_05986985 (SNX18B, SNX18)


Basic Information

Item Value
gene id CI01000304_05985483_05986985
gene name SNX18B, SNX18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5985386 ~ 5987571 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_05985483_05986985.mRNA
ATTTGGGTGAACAGGCCATGTAGCACAGTGCAATAAAATGATAGCGGCACACAATGTATTTGAAGCTCTCAGGTTAATCTGCTTCCTGGTATAAACACAGCCTAATCAGTACATTCTGTAAAAGTGAATAAAAATCTCTGCGTAAACTGCAGAAATTCACATGCATGTTAGACAAGTAGAAGTAGTATTTTTCATGTACTTTTCATAGGTAGTGTGTCTATTTAAGATTAGACCTAGGCTATATTAAAGTTGGCTGATAATTGGACACAGTGACTTGTATACGGGGGTACTGGGGTTTATTCTTTGCCCCAGGCTGATTATTCTGATTGGCTCCACCCTCGATTATTCTGCCCTGGACCGCAGAGCGCATTCAGCGAAGAGAGGCAGGCGTACACAAAACCCACTTTTTCAATACCCTCTGAGAGGAATTTAAACTGTTTTCACAGGATAATGTTTTCAAAAGTTTTCGACGTGTTTTGGTAGAAAGCAGAGACCGTAAATTCCTGAAGAGGTTGATTTAACGGAACGGCGCGGAGAGTGTATTGTAACTTTGGAAACTGAGTTTACAAAGCGTTTCCACACAACTATGGCGCTCAGAGCGAGAGCTTTATACGACTTTATCTCTGAAAATCCCGGCGAGATATCTGTGACAGAGAACGAACTTCTAACTTTGTGTAGTGAAGAGGTTGTCGATGGTTGGTTGGAGGGCACGAACAGCAGAGGTGAGACGGGGCTCTTCCCTGCATCATACGTGGAGATTATGAGGACTGACACATCACTACATGATAACGGGACATCCGCTAGTCAGGACTATTACTACCAAAGTCCTCAGAGGAGGGACACCTCAAACGAGTCGACACCCACTCATTCCGCTGTTTACCAGGGACACCTTCAGCAACAGCGACATAGTTTTCAGACGAGCCAAGGAAGCGACGAGGATTGGGACGATGACTGGGATGACAGTGTCACCTCGGAGGAACACGGAGGAACACCTGAAAAACGTGGGAATACTCAAACGGGATATACCAGCACAAGCACTTCTGCTTCTCGACGTGGTAGTGGGCAACAGTCCAAAAGCACAGGAACAGTTGGAAAAAATCTCAATAGGTTTTCAACCTTTGTAAAGTCAGGCGGTGAGGCTTTCGTTTTGGGTGAAGCTTCAGGTTTGGTCAGAGATGGAGACAAAATATTTGTGGTTATGGGTCAGTACGGTCCAGAATGGCAAGATAACCCATATCCATTCACTTGCATTATCGATGACCCTACAAAACAGACCAAATTCAAAGGCATGAAGAGCTATATGTCCTATGGACTCACACCTAGTCATACTCAAAGCCAGGTGAATAGAAGATACAAGCACTTTGACTGGCTTTATGCTCGACTTGTAGAAAAGTTCCCTGTCATTTCGGTCCCTCACTTGCCAGAAAAACAAGCCACAGGTCGATTTGAAGAGGATTTTATTTCTAAGAGGAGGAAAGGTTTAATATGGTGGATGAATCACATGACTAGTCATCCTATTTTATCCAAGTGTGACGTTTTCCAGCATTTCCTCACCTGCAGCAGCAACGACGAAAAGGCCTGGAAGCAAGGCAAGCGAAAAGCAGAGAAGGACGACTTAGTCGGCGCTAATTTCTTCCTCACTATCTGTCCTCCAGCTTTACCGCTTGACTTACAAGAGGTGGAAAGCAACATAGATGGTTTCAAAACGTTCACCAAAAAAATGGACGAAAACCTCATACAGGTCAACGTCACTATTAACGAATTTGCCAGAAAGCAGATCACTGGTTTTAAAAAGGAATATCAGAGAGTTGGACAGGCTTTCAGACTTTTAAGTCAGGCCTTTGAATTTGACCAGCAAGTATACTCAATTCCATTAAACAAGGCCATGGCACACACTGGAGAAGTCTATGAGACCATTGGGGATTACTTTGCAGAGCAGCCTCGTCAGGATTTGGAGCCAATTTCTGATCTTTTAGCGATCTACCAGGGACACCTTGCAAACTTTCCAGACATTATCCATGTTCAGAAAGGTTTGGAATTTTTCTCATGTGTTTGCTCAAATACCACTTGTCAGAATGGCATGCCATAAAATGTGGATATAGGTCAGTAGGTCATTAGTTTATGTGCATGCCATCAGCTTTAAGACACTATCCAGTGTCAGGTTATTATTTGAATGGAAAATTAAA

Function

symbol description
snx18b Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to act upstream of or within mitotic cell cycle and protein transport. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX18 (sorting nexin 18).
snx18 Enables phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including cytoskeleton-dependent cytokinesis; endosomal transport; and positive regulation of GTPase activity. Located in cytoplasmic vesicle and extracellular exosome. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with clathrin-coated vesicle.

GO:

id name namespace
GO:0006897 endocytosis biological_process

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_05985483_05986985.mRNA True 2186 mRNA 0.43 1 5985386 5987571

Neighbor

gene id symbol gene type direction distance location
CI01000304_05936875_05943741 RASGEF1BB coding downstream 41645 5936875 ~ 5943741 (-)
CI01000304_05921207_05927778 NA coding downstream 57439 5921139 ~ 5927947 (-)
CI01000304_05913482_05916006 NA coding downstream 68855 5912789 ~ 5916531 (-)
CI01000304_05866507_05878152 NA coding downstream 106612 5866368 ~ 5878774 (-)
CI01000304_05843719_05856695 LHX6 coding downstream 127575 5842311 ~ 5857811 (-)
CI01000304_06045069_06049887 FSTA, FSTB, FST coding upstream 57334 6044905 ~ 6049971 (-)
CI01000304_06063226_06079147 ITGA2.2 coding upstream 75655 6063226 ~ 6079147 (-)
CI01000304_06092291_06110594 ITGA2 coding upstream 104423 6091994 ~ 6110644 (-)
CI01000304_06123328_06162242 ITGA1 coding upstream 133229 6120800 ~ 6162242 (-)
CI01000304_06204719_06212827 NA coding upstream 216535 6204106 ~ 6213176 (-)
G422144 NA non-coding downstream 33916 5951040 ~ 5951470 (-)
G422143 NA non-coding downstream 34401 5950758 ~ 5950985 (-)
G422142 NA non-coding downstream 35836 5949165 ~ 5949550 (-)
G422133 NA non-coding downstream 74336 5907650 ~ 5911050 (-)
G422128 NA non-coding downstream 92799 5892307 ~ 5892587 (-)
G422189 NA non-coding upstream 50855 6038426 ~ 6038723 (-)
G422164 NA non-coding upstream 73235 6060806 ~ 6112439 (-)
G422214 NA non-coding upstream 194562 6182133 ~ 6182433 (-)
G422217 NA non-coding upstream 200161 6187732 ~ 6188010 (-)
CI01000304_06222605_06223109 NA non-coding upstream 233575 6221146 ~ 6224274 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1312439 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 1720185 4263846 ~ 4265201 (-)
G419354 NA other downstream 3719145 2262502 ~ 2266241 (-)
G419353 NA other downstream 3749280 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 489880 6480743 ~ 6483986 (-)
G422354 NA other upstream 643515 6631086 ~ 6631499 (-)
G422378 NA other upstream 757108 6744679 ~ 6783046 (-)
G422810 NA other upstream 1642588 7630159 ~ 7652703 (-)
G423386 NA other upstream 2874652 8862223 ~ 8865296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001925 snx18b coding NC_007121.7 CM002894.2 9092815 ~ 9097996 (+)
bowfin (Amia calva) AMCG00009999 snx18 coding CM030129.1 CM030129.1 8980755 ~ 8997868 (+)