CI01000304_06240590_06242902 (APLNRB)


Basic Information

Item Value
gene id CI01000304_06240590_06242902
gene name APLNRB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6240466 ~ 6243012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06240590_06242902.mRNA
ATTCTGACCTGAACACATCACAAGCAACTTCTCTGTGATTATTTAGATCTCTTGTCAACTGATACTTTAAACACTTAAAGATTTTTGGAGGAATGAATGCCATGGACAACATGACTGCTGACTACAGCGATTACTACGACGAGACAGTAAACAACACAATGTGTGACTTTGATGAGTGGGAACCATCATATTCACTGATTCCTCTGCTCTACATGCTCATCTTCATCCTGGGCCTCACTGGCAATGGTGTGGTCATCTTCACTGTGTGGCGGGCCCAGTCCAAGCGGAGAGCTGCGGACGTCTACATTGGAAACCTGGCTATTGCTGACCTGACCTTTGTGGTGACTCTGCCTTTGTGGGCCGTCTACACTGCCCTGGGATACCACTGGCCTTTCGGCGTGGCTCTCTGCAAGATCAGCAGCTACGTGGTGTTGCTCAACATGTACGCCAGTGTCTTCTGCCTCACCTGCCTGAGCTTGGACCGCTACATGGCCATCGTGCACTCCCTCACCAGCACACAGCTGCGGACCAGAGGGCACATGCGGGCCTCGCTGGCCACCATCTGGTTTCTCTCAGGTGTGCTGGCTGCACCCACCCTGCTGTTCCGCACAACAGTGCATGACGTCGAGGCCAACCGCACCTCCTGCGCCATGGACTTCAGCACGGTGAGCAAAAAGGGCCAGGAGGGCTTTTGGATTGCAGGCCTCAGCATCTCCTCCACGGCTCTTGGCTTCCTGATCCCCCTTCTAGCCATGATGGTGTGCTATGGATTCATCGGCTGCACCGTCACACGTCATTTCAACAGCCTGCGCAAGGAGGACCAGCGCAAGCGGCGTCTGCTGAAGATCATTACCACATTGATAGTGGTGTTTGCTGCATGCTGGATGCCCTTCCACATTGTGAAGACCATGGACGCCCTCTCCTACCTGAACCTAGCACCTGACTCCTGCACCTTCCTGAACCTCCTGTTGTTGGCCCATCCCTACGCAACCTGCCTGGCGTACGTCAACAGCTGCCTCAACCCACTCCTCTACGCCTTCTTTGACCTCCGCTTCCGCTCTCAGTGCCTCTGCCTCCTCAACCTGAAGAAAGTCCTTCACGCCAGCCCCGCCAGCTCCCTTTCTTCACAGAAGACTGAGGCCCAGTCGCTGGCTACTAAGCCCCAGAGTTACGTCTGGAGATTGAGATTCATAGACTCTGCTGTTACTTTGGAGCTGCAGGGTGCCTCAAACTATGTCTATGTTGAGTACACAGATGCAACACTAAGGAGCTCTTTAAAAAAAGACCAAATATCATGACCTAAATATTAACCCTGAGATGTTAAGTACTACAAAGTTTCTAAATAATAATAATAAAAAAAAAATTGTTATTTGAAAATACTCAAAACAAATAATTGAATCAACTGCACTAGTGTGTAATAAA

Function

symbol description
aplnrb Enables apelin receptor activity. Involved in cardiac muscle tissue development; cell migration; and gastrulation with mouth forming second. Acts upstream of or within with a positive effect on determination of heart left/right asymmetry and determination of liver left/right asymmetry. Acts upstream of or within several processes, including circulatory system development; endodermal cell differentiation; and mesodermal cell migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including angioblastic mesenchymal cell; blastodisc; cardiovascular system; mesoderm; and pleuroperitoneal region. Orthologous to human APLNR (apelin receptor).

GO:

id name namespace
GO:0001702 gastrulation with mouth forming second biological_process

KEGG:

id description
K04174 APLNR; apelin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06240590_06242902.mRNA True 1422 mRNA 0.51 3 6240466 6243012

Neighbor

gene id symbol gene type direction distance location
CI01000304_06234231_06236303 NA coding downstream 4057 6234205 ~ 6236409 (-)
CI01000304_06222605_06223109 NA coding downstream 16192 6221146 ~ 6224274 (-)
CI01000304_06204719_06212827 NA coding downstream 27290 6204106 ~ 6213176 (-)
CI01000304_06123328_06162242 ITGA1 coding downstream 78224 6120800 ~ 6162242 (-)
CI01000304_06092291_06110594 ITGA2 coding downstream 129822 6091994 ~ 6110644 (-)
CI01000304_06270879_06289706 TBC1D10AB coding upstream 26181 6267565 ~ 6290510 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding upstream 55693 6298705 ~ 6315061 (-)
CI01000304_06324113_06327228 HVCN1 coding upstream 81079 6324091 ~ 6328179 (-)
CI01000304_06395132_06433884 SKIV2L2 coding upstream 152023 6395035 ~ 6433884 (-)
CI01000304_06461313_06465520 NA coding upstream 217444 6460456 ~ 6465520 (-)
G422232 NA non-coding downstream 8999 6231222 ~ 6231467 (-)
G422231 NA non-coding downstream 9298 6230942 ~ 6231168 (-)
G422229 NA non-coding downstream 11569 6228540 ~ 6228897 (-)
G422228 NA non-coding downstream 12207 6227989 ~ 6228259 (-)
G422227 NA non-coding downstream 12639 6227526 ~ 6227827 (-)
G422240 NA non-coding upstream 20750 6263762 ~ 6264045 (-)
G422246 NA non-coding upstream 81447 6324459 ~ 6324994 (-)
G422256 NA non-coding upstream 204732 6447744 ~ 6448495 (-)
G422318 NA non-coding upstream 257707 6500719 ~ 6501031 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1567519 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 1975265 4263846 ~ 4265201 (-)
G419354 NA other downstream 3974225 2262502 ~ 2266241 (-)
G419353 NA other downstream 4004360 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 234439 6480743 ~ 6483986 (-)
G422354 NA other upstream 388074 6631086 ~ 6631499 (-)
G422378 NA other upstream 501667 6744679 ~ 6783046 (-)
G422810 NA other upstream 1387147 7630159 ~ 7652703 (-)
G423386 NA other upstream 2619211 8862223 ~ 8865296 (-)

Expression


Co-expression Network