CI01000304_06270879_06289706 (TBC1D10AB)


Basic Information

Item Value
gene id CI01000304_06270879_06289706
gene name TBC1D10AB
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6267565 ~ 6290510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_06270879_06289706.mRNA
AAACACCACATAAAAGTATCTACATGTTAAAACCTGTGTATATTAGTCAAATCAATAGAGTTAGTTAATTATGGTTGCACTTGCAATTATAAGGTGATGTAAATAATACTGCATTGTACGCGCGCTGTACTGCGCATAATCAGCCACGCCTCCTTAAAGCTCGCGGCTGAGACTTTAGCTCAAGCCATTCAGTTAGTCACATACAAACGCTTATAAACACAGATTATATGAAATAAGATTAAAACGATTGCGTCAGAAACATACAAACGCCGACTTTACAGCACAGTGAGTCTGAGTTTTATTCGTTTATACGGAGAGTTGTCAAGGTGTGTTTTTTACGTCAGGTTAGCTTGTTAGCTTATAACTATTACAATTGTGTTTTTTTAAAGAGTCTGACAGAATACAAACATTAACTTATATTCAGTCGAGTTCCAGTTTGTTTCAGCCATAATAAACTAGCGCTATACATTTCTTTAGACAGAGAGATATTATTACTTTGCTAAGCTAATTATAATATGTCTTTATGTATGTGTCTTCTGTGAAACTCGTTTATAACTATAGCTTGTACGTATTCATAATGGCCTGTCAGGGTCAGATAAACCTTAGTTTTACTTTACTTTAATGTCTTTACCATCAGATATGCCGTATCGTTAGTGTGACTGGAGGCTGTGAGGCTCAAATCTCAGTGTTGATAGTTTGAGGCGGTTGACAGGAGGAAATCCATTATTTGTATGTCAAAAGACATTTTATTCTTGCCTGGGCCAAAAGCAAGTTCATTTGTCGCGTTTGGAGCGTATATTCATCATGGCTAAGCTTCAGTCGGGGAACGGAGTGCAGTGGAAGGACAACAAGAGTCAGCGGGGCACGGTGGAGAATCTGGCCGAGCACGAGAGCTCTTCTCTGGGCTCAAACACTGAGCTCAACGGCTTCGCCAACACCGAGATCCAGCCCGACAGATATGGATTCATAGGAGGAGCTCAACAGAGCGCAGGAGAAAATGATGATATTCCTCCAGACGTGCTCCGGCAGAGAGAAGCCAAATGGCTGGATATGCTCAACAGTTGGGACAAGTGGATGGCCAAAAAACACAAGAAGGTGAAGGTGCGTTGTCAGAAAGGCATCCCTCCATCACTCAGAGGTCGTGCGTGGCTTTATCTTTCTGGAGGCAAAGTGAAGAAAGAACAGAATCAGAGCAAATTCCAGGAGTTGGACAGTCAACCTGGAGATCCTAAATGGCTGGACGTAATAAAGAAAGACCTCCACAGACAGTTTCCATTCCATGAGATGTTTGTAGCTCGAGGAGGACACGGGCAGCAGGATCTGTTCCGGGTGTTGAAGGCGTACACAGTGCACAGACCGGAGGAGGGTTACTGTCAGGCTCAGGCCCCTATAGCTGCAGTGCTGCTCATGCACATGCCTGCTGAGGATGCTTTCTGGGGTCTGGTCCAGATCTGTGAGAAGTATCTGCCCGGATACTACAGTGCAGGCCTGGAGGCCATCCAGTTAGACGGCGAGATCCTGTTCGCTCTGCTCAAGCGCGTGTCCCCGGTGGCCCACCGGCATCTGAAGAAACACAAGATTGACCCTATCCTCTACATGACAGAGTGGTTCATGTGTGCCTTCTCTAGAACGCTGCCCTGGGCCTCTGTGCTGCGCGTGTGGGACATGTTCTTCTGTGAGGGAGTGAAGATCATCTTCCGTGTAGGTCTGGTGCTGCTGAAGTGCATGCTGGGATCTCAAGAGAAACTGAAGGCGTGTCAGGGCCAGTATGAGACCATGGAGCTGCTCAGATCTATTGAGCCACGATACATGCATGAGACTTTCCTAGTGCAAGAGGTCATTGAATTGCCCGTGTCTGAGCGAGACATAGAGAAGGAGCACCTCTCTCAGCTCCGGCGCTGGAAGGAGACCCGCGGAGAGCTGCACTGTAAATCCCCTCCCAGAATGCACGGCGCCAAAGCCATCATGGCCGCTGAGCCGCCCAGTCGCCAAGACCTCAAACAAAACCCCACAATCATCGTCGAGACACCGCAGGCCACCGAGAGCCAGGTGGAGAAAGGGAAAAAAGACAAGAAGAGCAAAATGGAAAAGAAAAAAGACACCTCGCCTCCCTTTAATCCGTACCCATTACCAAGTGACCCAACATTACCGAGCGACAACCTGTCGCAGCACCTGCAGAAAGACGTTCCCCTGCAGAGCTCCAGTCAGAGTCTTAGTAGCGCGGAGCACGACACCTACCTGTAAACCACTGGAAGAGGGACGCCAGTGCAGATGGCTAAATGTTCACTGTGCTAAAACATCTGGCATCAGTCCGCTCCTCCCTCCCCACTCTCAGGATTTTGCATCAAAGGGAAGTTCATGTAACACAACTGGACCAAAAAGTACTTGTGGGAGTCACAATCACATAGGAGAACCTTATTACAGAGGATGAAACTTTACTTCATGAGCTTTAAAGTGTGTTTACGTGATTTATATGTGTATGTGCATGTTTGGAAATGAAGGACAAATAGTCAAAAGCAACTCTCGGATCTCTAAATGAAGCGTTTATGAGCTGCGCTGGATGCAGATGTTCTCATGCTGTTTAAACTAGTTATGGTTTCTGCTAGTAAGTACAGAGAACACACTGTAGTGGGATGCAAGTACATTTCCTCCATCTTCCTCAGGAGATTACATTTGTCTGTTTTTGTACTTAAAAGGAACACTCAAAAAATATTTAGGCCTAAATTAAAGATTTATGTATTTGAATTGCATATCAAATGACAGTTTTAACATAAATTAACTAATAAACTTAATATGATGCAGATTGGTCAATCATGCATAAATGAAACAGGATTTCTGTAATAGTACTAATAAACAATGTTTTTTTAATATATCTATCAGTCAATCCAATTAGATTCAATCTCATTCATTTTAATTGACTGAATATTGCTTGTTCCATGGCTAGCCATATTTTAACCATGTTCATACTTTTTAACTGAATAAATGTAATTATTTTCACAGTGAACAGATTTATGCTTATTCTAAGGATGAATGCAATTTGAAAATATTTAAATAAAATCAAATTGATGAAAATAGTTAATTGTAAACTATGCCATGATTTTATGAAATATTACCTGTTTCTTACCCGCTCAATTTATGTATGACTGACAAATATTCATCACATTAAGTTTATTAGGGTTTTTTTTAACTGTGTAATCCAAATGGATGGAAATTTTATATGCAATTCAAATATATAAATATTAAATTTAGGCCTTTTTTTTTTTTTTGAGTGAATAGTTAAAAAAAAAAAAAAAAGTCTTATTCCAAAATCTGTTTTTTCTTTTCCCTTTTTTTTTTTTTTTCCCCAGTGGAACCAATAGCAGCAGTTTTGAAGAATCTTTACATTGCACTTTTCCACAGAGACCCAAAAAAGCACCCAAAAATGCCATACAATTTGTTAATATGACATCATATGCTCAAATAGACTGTTTTTATGGTGTTTCCTTAGCTTTTAGGTCAGAAGAGCTGTGCAAATATTCTTCAGAGAATGAGAGAGTAAATAATAACAATGAAATCTTTTAAGTTCTTGTCATTAGCATCAATATAAGTGGAAGATTTTGCATCTGCCTGGCAGTAAATATTTTTCCGATTTGAATTCAGTTGTAATTCATGGTCTTGACCACTAAGGGACTCTATTGAGCTATTTTTTTTCAATCCCAAATTCAGTTGCAGTTCACCTTCTTGAGCACTAGAGCAGAATTGGGAGAGGTCAGTGTTACATCACATGACCAATGTTCTCTGACATCACTGAAAACATTAACTATATGAACTATTTAACTTAGTGCCAAAATTAACATATGTATATAAAACATAATTTTTCTGAATAGATTTTAATTCCATGCAAAAGTCTATCTGAATCAATCTATTGAATGAACTTTTGGGAGAAATAAA
>TU484858
AGTTTTGAAGAATCTTTACATTGCACTTTTCCACAGAGACCCAAAAAAGCACCCAAAAATGCCATACAATTTGTTAATATGACATCATATGCTCAAATAGACTGTTTTTATGGTGTTTCCTTAGCTTTTAGGTCAGAAGAGCTGTGCAAATATTCTTCAGAGAATGAGAGAGTAAATAATAACAATGAAATCTTTTAAGTTCTTGTCATTAGCATCAATATAAGTGGAAGATTTTGCATCTGCCTGGCAGTAAATATTTTTCCGATTTGAATTCAGTTGTAATTCATGGTCTTGACCACTAAGGGACTCTATTGAGCTATTTTTTTTCAATCCCAAATTCAGTTGCAGTTCACCTTCTTGAGCACTAGAGCAGAATTGGGAGAGGTCAGTGTTACATCACATGACCAATGTTCTCTGACATCACTGAAAACATTAACTATATGAACTATTTAACTTAGTGCCAAAATTAACATATGTATATAAAACATAATTTTTCTGAATAGATTTTAATTCCATGCAAAAGTCTATCTGAATCAATCTATTGAATGAACTTTTGGGAGAAATAAAGGAGGTCTCTGCTGAGAGCAGGTTTGCACACACTGTCATGACAGATACTGTGTACATTCCGTGCGTATGTTCCAATTATCATCATCTTGTATTTCTGTTGTGGTCCAATGTTATCTTATGTGTAAGTTAGCTGTGTATGTACATAACTTTGACTGTCAAATTCTTGACCAAGAGATTGTTTTTGCACATTGCCATCTTGATTTACTAAAAATGAAGGGATGCTGTAGGGCACAATCCTCTGACTTTTTGTAGGGTGAAGAAAAATTATATTTTTTAAATATCTATGGATTTATTTTCTCTGATGTAAATAGAATATCCAAGACAATTCTAACACTATGAGACTTTTTATTTCTCTTCTTGCTATGGCTTCTTGTAATATATGTATATTCATGAGCATTTATGGCAAGATTTCCTTTGTATGCGCTCATTGGTCGAGGTGTAGAAATTATTGCTGCAAGTCTTTTTCTTTGGGAGGAAATGATAATTTTGTGAGTTATCAGTGCTGTCTAGTTCATATCAGATGTCATTTCATTTGACTGACATCATTTACCCTATATTTCACTATGAGGAACCACAAACAGATACTTCGTATGCATGCTTGATCTCTATTGATTGCTGAATTTTATGCGCTGATGATCCATGTCATATTTATTAAGCTTTTTTTTTTTTTTATAAATTAAGTTCAATCTTCTTGTGGGAAATCACATTCATTGAGGTTGAGAAGGTATTCTCATATAGATTTAGTCACAAAAACAATGCTGTAATAAAGCCATGTTACATTTTTAATGTGAGAAGCAAGCATATTCTTAATTTGGTAACACTTTATTTTACAGTGTCCTTGTTACATGTAGTTACTGTAGTAATAACTATAAATTATGCATAATTACATGCAACTAACCCTGAACCAAACCCTTACCCTATAGTAAGTACATGTAGTTAATTATTAATTACTCAGTAATTAAGTGCATATTTACACTGTAACAGACACTTTAAAATAAAGTGTAACTCTTAATTTAGTAACTGTACAATAAGGTTCCATTAGTTAACATTAAATGGTGCATTAACTAACAATGGGCAATACATTTGTTCAAGATTTATTAATCTTTGTTACCATTAAAATTAAGATTAATGGGTAACGCTTTATTTTAGTGTCCTTGTTACGCATGTTACATGTAGTGATAGCTATAAATTATACATAATTACATGCAACTAACCCTAAACAAAACCCTAATCCTAACCATAATTATATAGTGTGTTAATTGATATTACTTAATGTATAATTACAGTGTAAGACGGACACCTTAAAATAAAGTGTAACATAGTAATGCTTTAGAGGTATTTTTTCATTGTTATTTCATGTTAACCAATGTAGTTAACAATTGAAACCTTATTGTAAAGTGTTTTCCATATTTACTGGTTTTAATGATGCGATGGCTCAAAGATTTAAATTTAAGAGCCCTTGAAAAGAACCAGCTAGTTGCATTGCAGCACTGTTTGGGAGAATCCACATTTTACATTCATTAATACAGGCTCTGTCAAAACATGTCACTTTGATAAGAAATTTAGTTCTTTTAGATTTTATTTCCCTGCAATCTTTCTTATTCACACTCAAATTGTTACGTCCTATT

Function

symbol description
tbc1d10ab Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D10A (TBC1 domain family member 10A).

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_06270879_06289706.mRNA False 3930 mRNA 0.41 9 6269193 6290510
TU484858 True 2195 lncRNA 0.31 1 6267565 6269759

Neighbor

gene id symbol gene type direction distance location
CI01000304_06240590_06242902 APLNRB coding downstream 26181 6240466 ~ 6243012 (-)
CI01000304_06234231_06236303 NA coding downstream 32784 6234205 ~ 6236409 (-)
CI01000304_06222605_06223109 NA coding downstream 44919 6221146 ~ 6224274 (-)
CI01000304_06204719_06212827 NA coding downstream 56017 6204106 ~ 6213176 (-)
CI01000304_06123328_06162242 ITGA1 coding downstream 106951 6120800 ~ 6162242 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding upstream 8195 6298705 ~ 6315061 (-)
CI01000304_06324113_06327228 HVCN1 coding upstream 33581 6324091 ~ 6328179 (-)
CI01000304_06395132_06433884 SKIV2L2 coding upstream 104525 6395035 ~ 6433884 (-)
CI01000304_06461313_06465520 NA coding upstream 169946 6460456 ~ 6465520 (-)
CI01000304_06473293_06476260 NA coding upstream 182783 6473293 ~ 6476366 (-)
G422240 NA non-coding downstream 5148 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 37726 6231222 ~ 6231467 (-)
G422231 NA non-coding downstream 38025 6230942 ~ 6231168 (-)
G422229 NA non-coding downstream 40296 6228540 ~ 6228897 (-)
G422228 NA non-coding downstream 40934 6227989 ~ 6228259 (-)
G422246 NA non-coding upstream 33949 6324459 ~ 6324994 (-)
G422256 NA non-coding upstream 157234 6447744 ~ 6448495 (-)
G422318 NA non-coding upstream 210209 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 220481 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 269277 6559787 ~ 6560009 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1596246 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2003992 4263846 ~ 4265201 (-)
G419354 NA other downstream 4002952 2262502 ~ 2266241 (-)
G419353 NA other downstream 4033087 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 186941 6480743 ~ 6483986 (-)
G422354 NA other upstream 340576 6631086 ~ 6631499 (-)
G422378 NA other upstream 454169 6744679 ~ 6783046 (-)
G422810 NA other upstream 1339649 7630159 ~ 7652703 (-)
G423386 NA other upstream 2571713 8862223 ~ 8865296 (-)

Expression


Co-expression Network